Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 0.0e+00 1755.3 962 100.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1563.9 1010 88.0
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 0.0e+00 1559.7 1002 87.9
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 0.0e+00 1165.6 1035 67.2
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 8.0e-300 1033.9 1059 62.0
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 4.5e-295 1018.1 994 63.8
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.5e-282 976.5 692 83.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 9.3e-99 365.9 1069 33.2
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 8.2e-95 352.8 1134 32.0
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 7.4e-88 329.7 1023 33.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.7e-87 327.4 1111 32.7
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 3.7e-87 327.4 1121 31.8
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.3e-81 308.1 1133 31.3
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.5e-77 293.9 1089 30.9
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 7.7e-77 293.1 1105 30.9
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 5.0e-76 290.4 1210 30.2
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.1e-75 289.3 1040 31.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 5.5e-75 287.0 1137 29.9
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 6.1e-74 283.5 1246 28.1
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.4e-73 282.3 1084 31.1
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.5e-72 278.9 1066 30.6
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.0e-72 278.5 1121 30.3
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 4.8e-71 273.9 1127 29.6
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.1e-70 272.7 1071 31.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.0e-70 270.0 1086 29.7
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.0e-69 268.5 1104 29.7
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.0e-69 268.5 1138 29.2
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 3.5e-69 267.7 1087 29.5
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.2e-68 265.0 1111 29.5
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-67 262.7 1154 28.6
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 1.5e-67 262.3 1140 28.8
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 3.2e-67 261.2 1154 28.9
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.2e-67 260.8 1205 29.4
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 7.2e-67 260.0 1199 28.9
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.2e-66 259.2 1210 29.2
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.2e-66 259.2 1092 30.0
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.4e-65 255.8 1056 29.4
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.3e-65 255.0 1103 29.0
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.7e-64 250.4 1060 29.2
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 7.5e-64 250.0 1110 30.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.3e-63 249.2 1111 29.8
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.2e-63 248.4 1026 30.4
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.8e-63 248.1 1102 27.9
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.7e-61 241.5 1210 29.0
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 7.7e-61 240.0 1002 29.9
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.3e-60 239.2 273 57.5
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.2e-59 234.6 1008 29.5
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.3e-57 228.4 220 61.4
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 6.8e-57 226.9 1036 29.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 7.5e-56 223.4 1037 28.9
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-54 219.5 1010 29.6
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.4e-54 219.2 1119 27.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.4e-54 218.4 1318 26.6
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 5.4e-54 217.2 1092 27.6
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 7.0e-54 216.9 1026 26.9
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.2e-53 216.1 269 51.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-53 216.1 1288 27.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.0e-52 213.0 1028 26.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-51 209.5 1047 28.4
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.5e-51 209.1 1012 29.3
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 2.5e-51 208.4 1153 25.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.3e-51 208.0 278 52.5
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 5.5e-51 207.2 1008 28.1
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 3.6e-50 204.5 757 32.5
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.0e-49 201.1 283 50.2
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 7.5e-48 196.8 962 27.4
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-47 195.7 270 48.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.7e-47 194.5 1017 26.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.1e-46 193.0 1022 26.4
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.1e-46 193.0 262 50.0
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.8e-46 192.2 267 48.7
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 5.4e-46 190.7 1150 27.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.4e-46 190.7 1045 26.0
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 9.2e-46 189.9 745 31.9
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.0e-44 186.4 427 37.7
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.6e-44 183.3 1072 28.5
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.6e-42 177.9 963 27.3
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.0e-42 176.8 1114 26.8
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.3e-41 175.3 1019 26.4
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 8.9e-41 173.3 263 47.5
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.8e-40 170.6 287 44.3
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 3.0e-36 158.3 1005 25.2
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 3.0e-36 158.3 646 32.4
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.5e-35 156.0 1006 28.6
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.9e-35 155.6 969 24.7
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.3e-35 154.8 266 43.2
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 6.2e-34 150.6 170 55.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.4e-32 144.8 251 43.8
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.6e-29 136.0 969 25.9
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 3.5e-29 134.8 888 25.7
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.5e-29 134.8 905 27.1
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.3e-28 132.9 1216 23.5
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.7e-28 132.5 240 42.5
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 7.3e-27 127.1 259 40.5
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 8.1e-26 123.6 972 27.8
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-25 122.5 120 55.0
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 2.2e-23 115.5 975 24.8
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.4e-22 112.8 424 30.2
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.4e-22 112.8 972 25.0
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 5.4e-22 110.9 127 54.3
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.4e-22 110.9 152 46.1
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 7.1e-22 110.5 146 43.2
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 1.1e-19 103.2 1000 23.8
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.5e-19 102.8 465 26.7
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.9e-19 102.4 224 41.1
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.5e-19 102.1 134 44.8
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.8e-18 98.6 997 23.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.1e-17 96.7 154 39.0
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.4e-17 95.5 997 25.6
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 4.0e-17 94.7 965 22.3
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 4.4e-16 91.3 990 23.7
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 7.6e-16 90.5 79 57.0
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.9e-15 88.6 1055 24.2
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.8e-15 88.2 41 82.9
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.1e-14 86.7 976 25.0
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.1e-14 86.7 786 23.0
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.2e-14 85.1 462 27.5
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.2e-14 84.7 988 23.0
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 9.3e-14 83.6 995 23.0
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.2e-13 83.2 995 22.9
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.0e-12 80.1 985 21.9
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.0e-12 80.1 1003 22.6
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 3.0e-12 78.6 102 44.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.1e-11 76.6 967 22.1
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.5e-11 76.3 150 40.0
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.9e-11 75.9 127 40.2
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 9.6e-11 73.6 152 39.5
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.3e-10 73.2 989 23.0
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 4.8e-10 71.2 127 37.8
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 4.8e-10 71.2 127 37.8
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.1e-09 70.1 66 51.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 9.0e-09 67.0 989 23.1
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 2.0e-08 65.9 604 23.7
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.6e-08 65.5 59 61.0
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.7e-07 62.8 366 26.8
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.7e-07 62.8 82 36.6
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.2e-07 62.4 607 23.9
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 4.9e-07 61.2 112 33.9
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.4e-06 59.7 585 23.9
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 3.2e-06 58.5 115 34.8
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 4.2e-06 58.2 86 36.0
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 5.4e-06 57.8 31 67.7


User provided reference genes

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