Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 0.0e+00 1753.4 902 100.0
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 0.0e+00 1693.3 901 97.0
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 0.0e+00 1567.4 881 92.1
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 0.0e+00 1078.9 919 67.6
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 8.9e-269 930.6 844 62.4
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 3.8e-70 270.8 934 31.5
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 4.2e-61 240.7 901 30.2
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 5.6e-53 213.8 883 28.3
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 1.2e-52 212.6 746 28.2
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 1.6e-52 212.2 873 28.2
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 7.0e-48 196.8 633 32.1
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 8.6e-46 189.9 891 27.9
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 1.9e-45 188.7 932 26.8
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 2.6e-42 178.3 881 27.4
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 3.7e-41 174.5 939 25.6
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 4.9e-41 174.1 865 26.5
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 4.9e-41 174.1 941 27.5
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 1.9e-40 172.2 1083 26.3
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 9.2e-40 169.9 919 27.9
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 1.6e-39 169.1 958 26.3
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 2.1e-39 168.7 925 26.9
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 6.0e-39 167.2 166 55.4
HanXRQChr02g0058451 Helianthus annuus HOM05D007138 ORTHO05D009148 3.0e-38 164.9 908 25.7
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 5.0e-38 164.1 1066 24.7
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 4.3e-37 161.0 915 25.7
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 7.3e-37 160.2 907 25.8
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 7.3e-37 160.2 943 25.8
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 1.2e-36 159.5 939 25.8
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 2.1e-36 158.7 927 25.2
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 2.8e-36 158.3 943 25.5
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 2.8e-36 158.3 205 44.4
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 2.8e-36 158.3 194 46.4
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 3.6e-36 157.9 510 30.0
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 3.6e-36 157.9 645 29.0
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 3.6e-36 157.9 967 25.3
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 6.2e-36 157.1 628 29.1
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 8.1e-36 156.8 652 29.3
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 1.1e-35 156.4 135 59.3
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.8e-35 155.6 640 28.8
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 2.3e-35 155.2 165 52.1
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 4.0e-35 154.5 879 26.8
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 5.2e-35 154.1 165 52.1
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 6.8e-35 153.7 165 49.7
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 8.9e-35 153.3 135 58.5
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 1.2e-34 152.9 157 55.4
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 1.2e-34 152.9 130 59.2
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 1.5e-34 152.5 369 35.8
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 1.5e-34 152.5 531 30.9
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 2.6e-34 151.8 151 53.6
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 3.4e-34 151.4 1042 26.2
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 4.4e-34 151.0 941 26.0
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 7.5e-34 150.2 177 48.6
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 9.9e-34 149.8 400 35.2
Lsat_1_v5_gn_6_59601 Lactuca sativa HOM05D007138 ORTHO05D009148 9.9e-34 149.8 929 25.0
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 9.9e-34 149.8 129 59.7
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 1.3e-33 149.4 147 51.0
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 1.3e-33 149.4 143 56.6
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 1.7e-33 149.1 156 53.2
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 1.7e-33 149.1 129 57.4
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 1.7e-33 149.1 134 57.5
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 3.7e-33 147.9 633 27.2
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 4.9e-33 147.5 265 37.4
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 6.4e-33 147.1 802 25.4
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 6.4e-33 147.1 317 35.0
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 1.1e-32 146.4 601 27.5
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 1.9e-32 145.6 204 46.1
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 5.4e-32 144.1 791 26.7
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 5.4e-32 144.1 857 26.1
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 7.1e-32 143.7 673 26.7
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 1.6e-31 142.5 891 26.3
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 3.5e-31 141.4 131 57.3
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 7.8e-31 140.2 156 50.6
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 1.0e-30 139.8 126 53.2
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 3.9e-30 137.9 623 28.3
Lsat_1_v5_gn_6_58941 Lactuca sativa HOM05D007138 ORTHO05D009148 5.1e-30 137.5 942 26.9
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 8.6e-30 136.7 566 27.4
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 1.5e-29 136.0 183 43.2
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 1.5e-29 136.0 564 27.1
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 1.5e-29 136.0 564 27.1
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 5.6e-29 134.0 508 28.7
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 1.2e-28 132.9 169 46.7
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 5.2e-27 127.5 559 26.8
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 5.2e-27 127.5 738 25.1
C07p13480 Brassica napus HOM05D007138 ORTHO05D009148 6.8e-27 127.1 585 26.8
BolC7t41843H Brassica oleracea HOM05D007138 ORTHO05D009148 6.8e-27 127.1 585 26.8
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 9.9e-26 123.2 131 50.4
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 9.9e-26 123.2 135 48.9
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 8.4e-25 120.2 911 26.0
Oeu056444.1 Olea europaea HOM05D007138 ORTHO05D009148 9.2e-24 116.7 129 48.1
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 5.1e-22 110.9 128 46.9
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 4.3e-21 107.8 141 42.6
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 2.4e-19 102.1 133 41.4
CDE09G0581 Ceratophyllum demersum HOM05D007138 ORTHO05D009148 5.2e-19 100.9 75 58.7
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 7.6e-18 97.1 111 43.2
Nn1g02395 Nelumbo nucifera HOM05D007138 ORTHO05D009148 4.0e-11 74.7 47 74.5
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 3.4e-10 71.6 111 36.9
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.9e-09 68.6 126 34.1
Atru.chr3.1785 Acer truncatum HOM05D007138 ORTHO05D009148 4.9e-09 67.8 211 31.3
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 5.4e-08 64.3 137 30.7
Lj6P349T30 Lonicera japonica HOM05D055095 ORTHO05D009148 4.6e-07 61.2 108 43.5
Lj6P354T17 Lonicera japonica HOM05D055095 ORTHO05D009148 4.6e-07 61.2 108 43.5
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 1.3e-06 59.7 81 33.3
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 3.9e-06 58.2 158 29.7
Ciclev10006158m.g Citrus clementina HOM05D007138 ORTHO05D009148 5.1e-06 57.8 111 36.9
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 5.1e-06 57.8 113 31.0


User provided reference genes

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