Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 5.6e-208 727.6 441 100.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 4.4e-205 718.0 441 98.9
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 5.4e-203 711.1 440 95.0
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 2.1e-178 629.4 440 84.8
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.1e-174 615.5 443 86.9
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 6.5e-172 607.8 442 87.1
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 2.4e-150 536.2 441 74.1
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 5.2e-145 518.5 441 73.5
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-143 513.8 443 73.8
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 9.4e-139 497.7 443 69.8
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.4e-137 493.8 453 73.5
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.5e-136 490.3 442 71.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.2e-135 486.5 457 65.4
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.7e-130 469.5 442 71.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 8.0e-130 468.0 441 66.7
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.8e-129 464.9 448 70.8
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.8e-129 464.9 448 70.8
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.5e-123 447.2 450 66.0
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.9e-123 446.8 439 66.3
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.9e-123 446.8 452 63.5
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.2e-122 444.1 455 60.2
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 3.0e-121 439.5 442 59.7
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 2.2e-119 433.3 450 61.3
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 3.7e-119 432.6 448 66.1
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.8e-118 430.3 458 63.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.4e-118 429.9 453 60.0
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.4e-118 428.7 456 63.6
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 3.5e-117 426.0 450 63.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 4.5e-117 425.6 446 63.7
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.3e-116 424.1 447 63.3
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.7e-116 423.7 451 61.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 3.9e-116 422.5 459 58.2
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.6e-116 421.8 461 57.9
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 8.6e-116 421.4 455 63.1
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.5e-115 419.9 464 55.6
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 7.3e-115 418.3 455 60.7
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.1e-114 415.2 357 82.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 6.8e-113 411.8 449 59.2
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.4e-112 409.5 451 60.5
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 1.1e-110 404.4 453 60.0
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-110 404.1 461 57.3
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-110 404.1 461 57.3
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 5.4e-110 402.1 440 56.6
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 3.5e-109 399.4 456 59.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 3.5e-109 399.4 451 58.1
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.3e-108 396.7 442 58.1
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.8e-106 389.8 451 57.9
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 6.2e-106 388.7 462 55.6
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 2.6e-104 383.3 451 58.5
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 6.4e-103 378.6 457 58.6
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.1e-101 373.6 445 57.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.0e-101 372.1 410 62.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 6.0e-101 372.1 447 54.8
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 8.6e-100 368.2 452 61.7
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.3e-99 365.9 453 58.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 5.6e-99 365.5 445 58.0
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.6e-98 364.0 444 57.7
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 8.1e-98 361.7 444 57.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.4e-96 356.3 433 58.0
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.2e-94 349.7 458 54.4
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.1e-93 347.1 433 58.7
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 7.8e-93 345.1 434 50.7
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.7e-90 335.9 452 47.6
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 8.1e-90 335.1 445 56.0
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.4e-89 334.3 446 54.9
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.4e-89 333.6 442 54.5
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.0e-88 330.5 430 46.0
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.6e-88 328.6 452 58.6
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.7e-84 317.4 421 54.9
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.2e-79 300.4 418 54.5
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.5e-77 293.1 435 44.8
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.6e-77 292.7 440 41.6
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 1.7e-76 290.8 380 55.8
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.3e-75 286.6 437 48.1
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.1e-62 245.0 444 44.6
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 7.9e-61 238.8 239 54.8
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.7e-58 229.9 465 48.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 2.4e-57 227.3 123 82.1
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 2.4e-57 227.3 123 82.1
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 7.2e-54 215.7 445 49.2
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.3e-42 178.3 464 35.1
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 8.2e-42 175.6 468 34.6
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 7.7e-40 169.1 148 54.1
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.5e-38 164.1 119 62.2
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.2e-37 161.8 123 57.7
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 2.1e-37 161.0 148 54.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.1e-37 161.0 173 48.6
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 2.1e-37 161.0 119 60.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 3.6e-37 160.2 156 52.6
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 4.7e-37 159.8 119 59.7
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 4.7e-37 159.8 119 58.8
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 4.7e-37 159.8 149 53.7
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 7.9e-37 159.1 148 53.4
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.0e-36 158.7 192 49.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.4e-36 158.3 154 53.2
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.4e-36 158.3 141 52.5
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.8e-36 157.9 176 48.3
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.8e-36 157.9 159 51.6
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.8e-36 157.9 159 51.6
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.3e-36 157.5 153 51.0
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 58.2
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.3e-36 157.5 122 58.2
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.0e-36 157.1 149 53.7
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.0e-36 157.1 149 53.0
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 3.0e-36 157.1 122 57.4
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 3.9e-36 156.8 153 52.9
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 3.9e-36 156.8 149 55.7
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.9e-36 156.8 152 50.7
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.9e-36 156.8 154 52.6
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 5.1e-36 156.4 192 47.4
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.1e-36 156.4 119 59.7
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 5.1e-36 156.4 119 58.8
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 6.7e-36 156.0 146 52.7
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 6.7e-36 156.0 150 50.7
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 6.7e-36 156.0 174 48.9
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 8.8e-36 155.6 266 37.6
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.1e-35 155.2 153 52.9
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.5e-35 154.8 156 50.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.5e-35 154.8 166 48.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.5e-35 154.8 166 48.8
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.5e-35 154.8 144 51.4
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.0e-35 154.5 152 50.0
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 2.0e-35 154.5 144 51.4
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.3e-35 153.7 119 58.8
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 3.3e-35 153.7 172 47.1
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-35 153.7 231 41.1
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-35 153.7 231 41.1
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 4.4e-35 153.3 151 53.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 4.4e-35 153.3 151 53.6
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 4.4e-35 153.3 146 50.7
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.7e-35 152.9 156 50.6
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 5.7e-35 152.9 156 50.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 5.7e-35 152.9 165 48.5
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 5.7e-35 152.9 172 47.7
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 5.7e-35 152.9 172 47.7
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 7.4e-35 152.5 146 50.7
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.4e-35 152.5 168 49.4
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 9.7e-35 152.1 119 56.3
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 9.7e-35 152.1 119 56.3
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 9.7e-35 152.1 419 36.3
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 9.7e-35 152.1 119 54.6
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.3e-34 151.8 164 49.4
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.3e-34 151.8 119 57.1
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.3e-34 151.8 154 51.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.7e-34 151.4 260 39.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.7e-34 151.4 153 49.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 2.2e-34 151.0 258 38.4
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.2e-34 151.0 119 57.1
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 2.8e-34 150.6 159 50.3
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.8e-34 150.6 258 38.0
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.8e-33 147.9 167 49.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.4e-33 147.5 188 45.2
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 5.3e-33 146.4 119 53.8
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 4.5e-32 143.3 111 57.7
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.3e-31 141.7 121 54.5
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 2.1e-29 134.4 150 56.0
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 4.0e-28 130.2 78 82.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 5.0e-23 113.2 379 43.5
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 5.9e-08 63.2 52 57.7
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.6e-07 59.7 49 57.1
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 6.6e-07 59.7 106 40.6
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 9.5e-06 55.8 84 45.2


User provided reference genes

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