Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.0e-188 663.3 355 100.0
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 7.5e-187 657.1 355 99.2
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 6.6e-167 590.9 352 90.1
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 2.0e-163 579.3 352 87.5
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 8.3e-162 573.9 314 97.5
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.7e-154 549.7 428 72.7
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.0e-143 513.8 316 88.9
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.8e-141 505.8 314 87.3
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.6e-139 499.2 363 74.1
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.8e-132 476.5 363 71.6
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 3.4e-131 472.2 374 70.1
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 3.8e-130 468.8 357 70.6
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 7.1e-129 464.5 357 69.2
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.5e-128 462.2 354 70.1
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 6.7e-127 458.0 371 67.9
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 8.7e-127 457.6 358 68.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.6e-125 453.4 337 70.9
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 2.8e-125 452.6 381 66.9
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 2.4e-124 449.5 337 69.1
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.0e-123 446.4 341 68.9
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 9.9e-123 444.1 352 66.8
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.4e-121 440.3 354 65.3
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.2e-120 437.2 338 67.2
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 2.7e-120 436.0 354 65.5
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 6.0e-120 434.9 346 67.3
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 7.9e-120 434.5 342 66.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.3e-119 433.0 341 66.3
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-118 428.7 341 66.3
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 7.4e-118 427.9 354 64.4
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 2.1e-117 426.4 400 60.5
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.7e-117 425.6 346 65.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 4.8e-117 425.2 336 65.5
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 8.2e-117 424.5 342 65.8
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 8.2e-117 424.5 356 65.4
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-116 424.1 341 65.1
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.4e-116 423.7 348 64.9
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.8e-116 423.3 354 65.3
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 5.3e-116 421.8 351 63.5
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.2e-115 420.6 348 64.7
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.0e-115 419.9 348 63.5
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 2.6e-115 419.5 359 61.8
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.0e-114 417.5 356 62.4
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.7e-114 416.8 348 63.5
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-114 416.0 341 65.1
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.9e-114 415.2 354 62.4
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 4.9e-114 415.2 347 64.0
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.2e-112 410.6 352 62.2
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 4.6e-112 408.7 349 64.2
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.3e-111 407.1 356 61.8
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.5e-110 402.9 367 60.8
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 9.7e-110 401.0 340 62.4
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 9.7e-110 401.0 355 60.0
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 9.7e-110 401.0 348 62.4
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.3e-109 400.6 373 59.5
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.3e-109 400.6 475 51.4
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 1.6e-109 400.2 341 62.5
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 6.3e-109 398.3 339 63.1
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 1.1e-108 397.5 339 61.9
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.1e-108 397.5 345 60.9
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 4.1e-108 395.6 279 74.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.2e-107 394.0 340 60.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.5e-107 393.7 339 62.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 7.7e-107 391.3 339 60.8
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.9e-106 389.4 342 59.4
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 6.5e-106 388.3 356 58.4
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 8.5e-106 387.9 370 57.0
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 4.6e-104 382.1 355 58.6
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.1e-104 381.7 341 60.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.3e-102 375.9 343 58.3
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 4.3e-102 375.6 307 64.8
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.3e-101 374.0 339 59.0
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.3e-101 374.0 351 56.4
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.3e-101 374.0 445 49.4
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 2.2e-101 373.2 351 56.4
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 4.8e-101 372.1 296 66.6
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 8.2e-101 371.3 354 55.6
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 8.2e-101 371.3 357 56.3
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-100 370.5 339 57.5
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 2.4e-100 369.8 355 56.3
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.1e-100 369.4 351 56.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 5.3e-100 368.6 354 55.6
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 6.9e-100 368.2 312 62.2
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 6.9e-100 368.2 355 56.1
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.6e-99 366.3 345 56.2
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 2.6e-99 366.3 337 57.9
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.4e-99 365.9 350 61.1
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.9e-98 362.8 335 57.3
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 5.0e-98 362.1 354 56.2
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 8.5e-98 361.3 354 55.9
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-97 360.5 354 55.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 5.5e-97 358.6 391 51.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 8.8e-95 351.3 375 52.3
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.5e-94 350.5 303 62.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 4.4e-94 349.0 303 62.4
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.7e-94 348.6 305 62.3
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 7.4e-94 348.2 297 62.6
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.8e-93 346.3 336 58.6
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.1e-92 344.4 329 59.3
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 5.3e-92 342.0 368 54.9
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.0e-92 341.7 338 57.7
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 9.1e-92 341.3 298 62.8
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.3e-90 337.4 561 41.4
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 3.8e-90 335.9 351 54.7
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 5.0e-90 335.5 257 71.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.1e-88 330.1 411 49.1
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 2.7e-88 329.7 354 52.0
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.7e-88 329.7 271 64.2
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 6.1e-88 328.6 321 55.5
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.8e-87 327.0 298 57.4
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 6.7e-87 325.1 321 62.3
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 2.6e-86 323.2 349 54.2
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.6e-86 323.2 300 59.3
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.4e-86 322.4 317 57.7
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.7e-85 320.5 348 51.1
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 3.8e-82 309.3 317 54.9
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.0e-79 299.3 225 68.0
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.5e-78 297.4 306 55.9
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 7.5e-78 295.0 243 67.9
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.8e-77 292.4 339 49.6
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.7e-72 275.8 347 47.8
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 8.0e-72 275.0 342 48.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 2.9e-66 256.5 329 47.7
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 8.3e-61 238.4 128 93.0
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 9.2e-60 235.0 249 52.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 6.6e-58 228.8 164 70.1
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 2.5e-57 226.9 157 71.3
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.2e-54 218.0 197 63.5
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 7.8e-51 205.3 201 56.7
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.0e-50 204.9 165 67.9
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 5.0e-50 202.6 325 38.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.1e-49 201.4 376 35.6
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-48 197.6 195 55.9
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.4e-47 194.5 220 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 4.0e-47 193.0 320 38.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 9.2e-44 181.8 165 60.0
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.0e-42 178.3 314 37.3
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-40 171.0 137 64.2
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.1e-40 170.6 113 74.3
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.1e-40 170.6 113 74.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.7e-35 153.7 234 42.7
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.9e-33 147.5 101 73.3
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.8e-29 133.3 130 56.9
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 4.2e-28 129.8 106 65.1
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-25 120.9 168 45.8
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 1.3e-24 118.2 155 47.1
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.6e-24 117.9 122 51.6
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.7e-21 107.8 237 35.4
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 9.3e-20 102.1 284 33.5
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.6e-19 99.8 113 49.6
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.9e-12 77.8 87 50.6
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.3e-10 71.6 234 29.9
Cfa023794 Carpinus fangiana HOM05D004482 ORTHO05D121655 7.4e-09 65.9 168 33.9
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 2.8e-08 63.9 62 59.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 1.1e-07 62.0 62 53.2


User provided reference genes

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