Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.4e-201 706.1 356 100.0
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 4.5e-200 701.0 356 98.9
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 3.8e-199 698.0 356 98.0
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 6.8e-180 634.0 354 90.4
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 6.0e-160 567.8 327 85.9
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 9.9e-155 550.4 353 77.6
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 1.4e-153 546.6 354 76.8
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.6e-152 543.1 352 75.6
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 4.6e-152 541.6 353 76.2
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 4.6e-152 541.6 372 72.0
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 1.3e-151 540.0 353 75.4
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 5.1e-151 538.1 351 76.6
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 5.1e-151 538.1 351 73.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.1e-150 537.0 348 74.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 2.5e-150 535.8 355 73.8
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.3e-150 535.4 355 74.9
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 4.3e-150 535.0 350 75.4
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 5.6e-150 534.6 348 76.1
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 5.6e-150 534.6 353 75.6
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.3e-149 533.5 323 79.9
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.6e-149 533.1 352 75.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.6e-149 533.1 353 74.8
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.6e-149 533.1 356 75.3
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.6e-149 533.1 353 73.7
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.8e-148 529.6 302 84.4
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 4.0e-148 528.5 352 74.1
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 6.9e-148 527.7 352 73.9
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 6.9e-148 527.7 353 73.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 9.0e-148 527.3 353 72.5
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 9.0e-148 527.3 352 73.0
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.2e-147 526.9 302 83.8
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.2e-147 526.9 356 74.2
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.5e-147 526.6 353 75.4
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.4e-147 525.4 364 73.4
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 5.8e-147 524.6 351 73.5
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 9.9e-147 523.9 303 83.8
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 9.9e-147 523.9 356 74.2
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.3e-146 523.5 386 68.4
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 2.9e-146 522.3 360 72.8
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 1.9e-145 519.6 351 73.2
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.4e-145 519.2 353 73.1
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.4e-145 519.2 351 72.6
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.4e-145 519.2 354 71.8
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.4e-145 519.2 352 71.6
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 3.2e-145 518.8 358 70.9
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.2e-145 518.8 356 73.0
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 4.2e-145 518.5 345 74.2
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 4.2e-145 518.5 352 72.2
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.4e-145 518.1 358 70.9
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 7.1e-145 517.7 341 75.4
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 9.3e-145 517.3 357 72.3
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.2e-144 516.9 353 73.1
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 1.6e-144 516.5 310 81.0
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.5e-144 515.4 352 72.7
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 6.0e-144 514.6 302 82.8
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 6.0e-144 514.6 392 67.6
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 7.9e-144 514.2 325 76.3
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.7e-143 513.1 312 79.5
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 2.3e-143 512.7 307 79.8
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.3e-143 512.7 345 73.0
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.3e-143 512.7 345 73.0
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 3.0e-143 512.3 303 80.9
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 3.9e-143 511.9 312 78.8
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 2.5e-142 509.2 348 72.7
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 3.3e-142 508.8 311 78.5
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 4.3e-142 508.4 312 78.2
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 4.3e-142 508.4 303 80.5
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 4.3e-142 508.4 303 81.2
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.8e-141 505.8 351 70.7
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 3.6e-141 505.4 305 78.7
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 3.6e-141 505.4 312 77.9
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 6.2e-141 504.6 311 78.5
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 2.4e-140 502.7 326 75.8
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.9e-140 501.1 326 75.5
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.1e-137 493.8 381 65.4
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.4e-137 493.4 399 65.7
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.4e-137 493.4 315 79.4
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 9.6e-134 480.7 304 74.3
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 4.8e-133 478.4 322 75.2
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 1.1e-132 477.2 340 71.5
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 4.0e-132 475.3 324 72.2
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.9e-130 469.2 350 66.9
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 3.5e-128 462.2 306 74.5
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 5.1e-127 458.4 356 66.9
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 2.2e-122 443.0 350 64.6
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.5e-121 439.5 302 72.2
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 4.6e-120 435.3 302 67.5
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.9e-120 434.5 321 63.9
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.9e-120 434.5 321 63.9
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.1e-118 430.6 307 66.4
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 3.1e-116 422.5 354 62.7
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 5.5e-113 411.8 284 70.4
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 1.5e-110 403.7 274 75.2
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.4e-105 387.1 280 67.9
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 1.8e-100 370.2 250 74.0
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 6.7e-95 351.7 303 56.1
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.1e-92 342.4 184 90.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.2e-88 330.9 306 52.0
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.2e-88 330.9 352 53.7
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 7.5e-86 321.6 379 50.4
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 2.2e-85 320.1 240 69.6
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 3.0e-79 299.7 310 49.4
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 6.3e-77 292.0 226 65.5
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.8e-76 290.4 241 58.5
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 4.0e-71 272.7 205 68.3
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.5e-65 253.4 249 57.4
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.5e-57 227.6 124 83.1
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.5e-57 227.6 124 83.1
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 4.9e-53 212.6 122 78.7
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-52 211.1 122 77.9
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 9.2e-52 208.4 182 63.7
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-50 203.8 150 71.3
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.1e-39 168.3 103 74.8
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.9e-37 159.5 309 32.7
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 3.5e-35 153.3 302 35.8
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 1.5e-33 147.9 80 87.5
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.9e-33 147.5 125 63.2
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 2.1e-32 144.1 101 71.3
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 5.8e-30 136.0 144 53.5
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 8.4e-29 132.1 117 61.5
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.9e-28 131.0 185 43.2
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 6.7e-26 122.5 101 64.4
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 4.3e-25 119.8 107 57.9
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.4e-23 114.0 131 51.9
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 2.0e-22 110.9 71 69.0
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.9e-20 104.4 181 41.4
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 7.4e-17 92.4 85 57.6
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.9e-13 80.5 64 59.4
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 2.5e-12 77.4 47 76.6
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.8e-08 63.9 59 57.6
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 2.6e-06 57.4 247 26.7


User provided reference genes

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