Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 1.2e-196 689.9 402 100.0
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 1.0e-187 660.2 402 96.5
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 3.5e-164 582.0 402 84.1
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 1.4e-141 506.9 411 75.2
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 2.9e-134 482.6 379 76.8
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 3.1e-120 436.0 411 67.2
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 1.8e-104 383.6 264 76.1
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 2.3e-91 340.1 413 55.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.3e-89 334.3 365 58.1
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 4.0e-88 329.3 397 56.2
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 3.4e-79 299.7 382 52.9
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 1.3e-78 297.7 404 51.2
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 8.5e-78 295.0 351 56.4
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 9.3e-77 291.6 389 54.8
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 9.3e-77 291.6 406 51.7
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 1.2e-76 291.2 421 52.5
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 1.8e-75 287.3 387 53.5
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 1.8e-75 287.3 350 56.9
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 1.5e-74 284.3 416 50.7
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 5.7e-74 282.3 335 56.7
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 7.4e-74 282.0 381 54.9
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 9.7e-74 281.6 421 50.8
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 1.3e-73 281.2 395 53.2
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 8.2e-73 278.5 351 56.4
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 1.4e-72 277.7 378 51.9
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 6.9e-72 275.4 395 51.1
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 2.0e-71 273.9 383 52.7
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 4.5e-71 272.7 394 51.3
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 1.3e-70 271.2 358 55.6
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 1.7e-70 270.8 394 51.5
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 1.7e-70 270.8 412 51.2
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 5.0e-70 269.2 367 53.1
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 6.5e-70 268.9 399 51.1
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 6.5e-70 268.9 385 53.0
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 1.4e-69 267.7 383 52.0
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 7.2e-69 265.4 353 52.4
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 9.4e-69 265.0 423 48.0
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 9.4e-69 265.0 279 55.6
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 9.4e-69 265.0 303 50.5
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 2.1e-68 263.8 392 50.3
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 3.6e-68 263.1 279 55.2
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 1.4e-67 261.2 389 50.9
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 5.1e-67 259.2 362 52.2
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 8.8e-67 258.5 387 52.5
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 8.8e-67 258.5 380 51.3
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.1e-66 258.1 301 51.5
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 2.0e-66 257.3 278 52.5
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 2.6e-66 256.9 389 49.1
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 2.8e-65 253.4 450 45.6
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 3.7e-65 253.1 281 52.7
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 4.8e-65 252.7 390 50.5
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 4.8e-65 252.7 400 51.5
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 6.3e-65 252.3 337 54.0
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 8.2e-65 251.9 378 52.9
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 1.8e-64 250.8 379 52.5
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 2.4e-64 250.4 384 51.8
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 5.3e-64 249.2 362 51.9
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 3.4e-63 246.5 399 48.1
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 3.4e-63 246.5 273 52.0
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 5.9e-63 245.7 386 49.0
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 1.7e-62 244.2 386 49.5
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 5.0e-62 242.7 403 48.9
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 6.5e-62 242.3 343 44.6
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 1.1e-61 241.5 214 59.3
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 1.9e-61 240.7 395 48.9
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 2.5e-61 240.4 403 47.1
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 2.5e-61 240.4 383 50.7
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 2.5e-61 240.4 459 43.4
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 4.2e-61 239.6 383 50.7
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 9.4e-61 238.4 240 55.8
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 2.1e-60 237.3 181 66.3
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 4.7e-60 236.1 250 54.4
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 7.9e-60 235.3 373 50.1
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 1.0e-59 235.0 392 48.0
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 1.4e-59 234.6 419 45.8
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 1.4e-59 234.6 386 49.7
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 8.8e-59 231.9 334 53.9
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 1.1e-58 231.5 400 47.5
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 4.4e-58 229.6 353 51.3
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 5.7e-58 229.2 279 51.3
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 6.3e-57 225.7 194 59.3
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 8.2e-57 225.3 395 47.1
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 8.2e-57 225.3 388 46.4
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 4.1e-56 223.0 347 50.7
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 1.2e-55 221.5 252 49.2
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 1.6e-55 221.1 343 49.6
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 1.7e-54 217.6 383 49.9
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 6.5e-54 215.7 291 45.7
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.6e-52 211.1 347 49.6
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 2.1e-52 210.7 183 61.7
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 2.3e-51 207.2 194 56.2
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 2.3e-51 207.2 269 46.5
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 2.3e-51 207.2 270 49.3
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 1.2e-50 204.9 406 42.6
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 5.7e-50 202.6 207 52.7
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 7.5e-50 202.2 402 43.5
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 3.7e-49 199.9 210 52.9
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 2.4e-48 197.2 280 44.3
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 5.3e-48 196.1 188 55.3
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 2.7e-47 193.7 370 48.1
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 1.0e-43 181.8 166 56.6
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 6.8e-43 179.1 213 50.2
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 9.8e-42 175.3 208 47.6
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 1.2e-39 168.3 277 43.0
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 1.2e-39 168.3 204 45.6
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 2.5e-37 160.6 218 42.7
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 1.0e-35 155.2 273 39.6
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 4.9e-33 146.4 315 34.9
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 8.3e-33 145.6 211 38.4
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 2.4e-32 144.1 263 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 2.4e-24 117.5 272 36.4
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 3.3e-21 107.1 174 41.4
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 1.0e-14 85.5 60 75.0
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 1.7e-14 84.7 242 30.2
SGA_v2.0_scaffold935G53736 Striga asiatica HOM05D002428 ORTHO05D008664 5.0e-14 83.2 175 49.1
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 2.4e-08 64.3 49 67.3
PRCOL_00004793 Prasinoderma coloniale HOM05D002428 ORTHO05D008664 3.9e-06 57.0 159 28.9


User provided reference genes

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