Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.2e-194 682.2 359 100.0
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.1e-184 649.0 359 94.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.3e-167 593.2 359 86.6
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.3e-164 581.3 362 83.7
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.0e-151 540.4 362 79.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.0e-146 523.9 360 79.4
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.8e-108 396.7 379 58.8
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.0e-106 391.0 379 58.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.9e-97 360.1 377 55.2
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.5e-97 359.8 381 53.0
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 2.8e-96 356.3 368 54.6
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.0e-95 354.4 381 53.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 8.9e-95 351.3 365 55.3
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.5e-94 350.5 381 52.5
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.0e-94 350.1 379 53.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.8e-94 348.6 368 53.0
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 6.4e-93 345.1 380 52.4
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.3e-93 344.7 368 52.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.9e-92 343.6 379 52.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.9e-92 343.6 369 52.6
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.4e-92 343.2 379 51.5
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.1e-92 342.4 378 52.1
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 5.4e-92 342.0 382 53.4
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.4e-92 342.0 384 51.0
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.6e-91 340.5 327 59.0
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-91 340.5 370 52.4
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.7e-91 339.7 369 52.8
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.7e-91 339.7 369 52.8
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.5e-91 339.3 368 52.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.7e-90 337.0 370 54.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.3e-90 336.7 377 51.7
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 8.6e-90 334.7 365 52.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.3e-89 332.8 365 54.2
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.6e-89 332.0 356 52.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 2.1e-88 330.1 358 51.7
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.6e-88 329.3 383 49.3
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.6e-88 329.3 342 54.1
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 6.2e-88 328.6 422 48.3
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 8.0e-88 328.2 371 50.9
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.4e-87 327.4 380 50.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.4e-87 327.4 371 52.8
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.8e-87 327.0 372 51.3
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.8e-87 327.0 336 54.8
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.3e-87 326.6 372 51.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 2.6e-86 323.2 372 50.5
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.5e-86 321.6 370 50.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 7.5e-86 321.6 372 50.3
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.9e-85 319.7 373 50.1
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 2.9e-85 319.7 349 52.1
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.4e-84 317.4 367 52.0
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.4e-84 317.4 379 49.6
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.2e-84 316.2 370 49.7
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 4.6e-83 312.4 377 47.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.3e-82 310.8 372 48.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-82 309.3 370 48.9
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.5e-81 307.4 372 48.9
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 4.3e-81 305.8 379 48.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 7.3e-81 305.1 376 48.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 3.6e-80 302.8 323 53.9
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 6.2e-80 302.0 376 47.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.2e-80 302.0 369 46.6
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 8.1e-80 301.6 368 47.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 3.1e-79 299.7 375 47.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 5.2e-79 298.9 371 48.2
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 2.0e-78 297.0 377 45.9
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.0e-78 297.0 352 49.4
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.6e-78 296.6 377 45.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.6e-78 296.6 355 47.9
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.6e-78 296.6 371 46.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 9.9e-78 294.7 325 51.1
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 9.9e-78 294.7 359 47.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 2.2e-77 293.5 327 53.8
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.7e-77 292.7 367 47.4
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 3.7e-77 292.7 371 48.5
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 4.9e-77 292.4 375 46.9
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.1e-76 291.2 371 48.0
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.9e-76 290.4 367 47.1
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.9e-76 290.4 362 48.1
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 7.1e-76 288.5 310 53.5
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.6e-75 287.3 303 53.8
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.7e-75 286.6 369 44.4
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 8.6e-74 281.6 375 47.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.5e-73 280.8 360 46.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.5e-73 280.8 377 44.8
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.3e-73 279.6 370 43.0
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 7.3e-73 278.5 372 47.6
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.6e-72 277.3 373 48.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 4.7e-72 275.8 372 44.4
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 4.7e-72 275.8 354 47.7
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 8.1e-72 275.0 378 45.0
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.1e-71 274.6 367 46.0
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.1e-71 274.6 370 42.7
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.4e-71 273.5 372 43.8
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 3.1e-71 273.1 373 44.0
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 3.1e-71 273.1 373 44.0
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 8.9e-71 271.6 387 44.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 3.4e-70 269.6 371 42.6
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.4e-70 269.6 371 43.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 4.4e-70 269.2 369 43.9
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 9.9e-70 268.1 374 43.3
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-69 267.3 369 43.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.7e-69 267.3 370 41.9
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-69 266.5 367 43.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-68 264.2 369 43.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.4e-68 263.5 354 43.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 5.4e-68 262.3 368 43.8
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 5.4e-68 262.3 368 43.8
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 7.1e-68 261.9 369 43.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 7.1e-68 261.9 364 44.8
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.2e-67 261.2 369 43.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 6.0e-67 258.8 369 42.5
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.5e-65 254.2 372 43.0
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 3.3e-65 253.1 372 42.7
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 3.3e-65 253.1 372 42.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 3.3e-65 253.1 328 48.2
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.3e-65 252.7 378 40.2
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 8.1e-64 248.4 374 40.9
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 5.3e-63 245.7 343 42.9
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.0e-62 243.8 381 40.4
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 5.8e-62 242.3 373 40.8
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.9e-60 237.3 329 46.8
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.4e-60 236.9 382 40.6
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.7e-59 233.4 358 42.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 3.3e-57 226.5 380 38.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 6.9e-55 218.8 328 40.5
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 3.2e-52 209.9 281 44.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.1e-47 194.9 332 39.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 6.9e-47 192.2 278 41.7
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.3e-42 177.2 291 40.9
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.6e-40 171.0 197 47.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 4.5e-38 162.9 129 64.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.5e-33 147.1 129 60.5
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.3e-33 146.7 225 40.4
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-31 141.0 132 55.3
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.5e-30 137.9 380 33.2
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.2e-28 129.8 383 33.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 7.9e-27 125.6 75 84.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.5e-25 121.3 252 35.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.7e-24 117.9 155 42.6
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.2e-24 117.5 208 38.0
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 6.3e-24 115.9 251 35.1
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.4e-20 102.1 138 39.9
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.4e-20 102.1 140 38.6
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.6e-19 101.3 381 28.1
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.8e-18 97.8 374 27.3
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.1e-17 95.1 379 27.4
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.0e-17 94.4 114 43.0
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.7e-17 92.8 132 38.6
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.7e-13 81.3 103 41.7
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.0e-10 72.0 93 48.4
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 2.6e-09 67.4 73 53.4
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 9.7e-09 65.5 63 57.1
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.1e-07 60.5 60 56.7
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 7.0e-07 59.3 60 55.0
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.2e-06 58.5 60 55.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.7e-06 55.8 78 44.9
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.7e-06 55.8 78 44.9


User provided reference genes

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