Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 0.0e+00 2016.5 1030 100.0
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1676.4 1054 82.5
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1645.9 964 86.7
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 0.0e+00 1563.1 880 90.0
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 0.0e+00 1557.3 1008 79.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 0.0e+00 1280.4 704 94.9
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 0.0e+00 1118.6 1028 55.6
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1101.3 942 59.1
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 1.5e-307 1059.7 1042 54.7
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 9.4e-307 1057.0 1029 55.0
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 2.0e-301 1039.3 1035 54.0
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 2.7e-301 1038.9 1047 53.5
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 3.8e-300 1035.0 1035 54.0
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 1.5e-299 1033.1 966 56.1
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 7.2e-299 1030.8 1030 52.7
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 7.2e-299 1030.8 1052 51.8
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 1.7e-295 1019.6 1034 52.6
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 4.8e-295 1018.1 956 55.4
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.8e-292 1008.4 1026 52.3
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 3.2e-291 1005.4 1032 53.2
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 5.5e-291 1004.6 1023 51.7
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 4.1e-286 988.4 1034 50.5
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 9.2e-286 987.3 1034 50.6
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 1.6e-285 986.5 1028 50.8
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 2.3e-284 982.6 1032 50.7
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 4.3e-283 978.4 884 56.9
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 4.7e-282 974.9 1034 50.3
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 4.7e-282 974.9 1024 49.9
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 4.4e-280 968.4 1093 49.4
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 5.0e-276 954.9 1024 49.5
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 6.6e-276 954.5 957 51.6
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 6.6e-276 954.5 938 53.1
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 8.6e-276 954.1 1034 49.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 5.6e-275 951.4 1025 50.0
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 8.9e-273 944.1 1019 49.9
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 7.5e-272 941.0 1027 48.8
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.3e-271 940.3 1071 48.8
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 8.3e-271 937.6 1031 49.3
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 1.2e-269 933.7 953 51.3
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 1.9e-267 926.4 1026 48.3
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 3.3e-267 925.6 1030 48.4
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.6e-266 923.3 1031 48.5
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 1.6e-261 906.7 905 52.0
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 6.6e-260 901.4 831 56.9
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.9e-259 899.8 1037 47.3
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 4.3e-259 898.7 773 59.0
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 4.1e-254 882.1 1028 46.2
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.2e-253 880.6 1036 45.8
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.0e-252 875.9 957 47.9
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 5.1e-252 875.2 1025 44.9
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 5.2e-249 865.1 1035 46.7
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 6.9e-249 864.8 1028 44.5
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.2e-248 864.0 1044 46.5
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 7.6e-248 861.3 1029 45.5
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 8.4e-247 857.8 944 49.4
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.6e-245 853.6 1034 45.6
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.7e-244 850.1 962 48.3
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.1e-243 847.4 1026 45.3
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 7.3e-243 844.7 908 50.2
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.4e-238 830.5 1014 44.0
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 6.0e-237 825.1 1032 44.6
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 6.7e-236 821.6 1036 43.2
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 5.8e-232 808.5 893 48.4
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 5.8e-232 808.5 1030 43.6
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 9.3e-230 801.2 1024 43.6
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 4.6e-229 798.9 1014 43.6
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.0e-228 797.7 1020 42.9
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 1.5e-227 793.9 970 43.0
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 2.5e-227 793.1 1033 43.2
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 3.3e-227 792.7 1017 42.7
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 9.6e-227 791.2 897 46.7
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 2.1e-226 790.0 1013 43.4
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 6.2e-226 788.5 971 43.3
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 6.9e-225 785.0 1022 42.9
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.5e-224 783.9 906 45.9
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 2.6e-224 783.1 1049 41.6
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 2.6e-224 783.1 1019 42.8
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 2.6e-224 783.1 903 44.9
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.3e-223 780.8 1019 43.3
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.3e-223 780.8 1024 42.9
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 2.2e-223 780.0 1019 43.3
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 7.1e-222 775.0 1031 42.2
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.6e-221 773.9 1015 43.0
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 1.5e-219 767.3 1013 42.7
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 4.1e-217 759.2 1016 42.1
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 9.0e-217 758.1 1065 42.7
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 3.4e-216 756.1 1066 42.2
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 4.2e-214 749.2 1050 39.5
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 3.0e-204 716.5 927 42.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 4.5e-200 702.6 961 40.4
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 1.1e-190 671.4 902 42.0
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 2.0e-184 650.6 942 43.1
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 2.7e-181 640.2 1047 37.9
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 1.4e-180 637.9 659 49.8
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 3.0e-180 636.7 818 42.5
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 6.3e-178 629.0 723 47.6
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 3.2e-174 616.7 812 41.0
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 1.9e-166 590.9 1064 35.7
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 1.7e-154 551.2 889 37.5
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 9.5e-142 508.8 921 34.4
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.2e-123 448.7 1028 31.1
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.7e-69 268.9 647 31.2
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.1e-64 251.9 1028 23.6
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 2.7e-59 235.0 283 43.5
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.3e-53 216.1 767 24.9
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 3.7e-53 214.5 319 40.1
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 7.5e-46 190.3 207 51.7
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 5.2e-39 167.5 605 25.8
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.1e-36 159.8 150 56.7
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 2.4e-28 132.1 597 23.6
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.0e-26 126.7 725 22.9
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 2.4e-23 115.5 136 46.3
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 9.2e-20 103.6 106 51.9
PGSC0003DMG400029639 Solanum tuberosum HOM05D006492 ORTHO05D035178 4.3e-17 94.7 52 100.0
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 9.9e-14 83.6 117 39.3
Migut.N00333 Erythranthe guttata HOM05D006492 ORTHO05D035178 8.1e-08 63.9 49 69.4
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 4.0e-07 61.6 73 46.6
Nitab4.5_0000493g0050 Nicotiana tabacum HOM05D006492 ORTHO05D035178 6.9e-07 60.8 37 86.5
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 1.5e-06 59.7 102 35.3
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 4.5e-06 58.2 67 46.3


User provided reference genes

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