Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 9.8e-99 363.6 203 100.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.6e-91 339.0 205 94.6
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.4e-84 316.6 165 99.4
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.2e-81 305.4 207 87.0
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.2e-66 256.1 190 77.4
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.6e-51 206.1 160 73.1
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 3.1e-44 182.6 213 56.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 5.1e-39 165.2 214 53.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 6.7e-39 164.9 209 52.6
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.7e-39 164.9 99 83.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.4e-35 152.5 206 47.6
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-34 151.0 206 47.1
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.0e-34 151.0 206 49.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.3e-34 150.6 202 49.5
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.3e-34 150.6 203 48.8
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.2e-34 149.8 214 48.1
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.9e-34 149.4 198 46.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.9e-34 149.4 212 50.5
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 6.5e-34 148.3 209 47.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 6.5e-34 148.3 209 47.8
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 6.5e-34 148.3 209 47.8
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 8.4e-34 147.9 200 45.0
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 8.4e-34 147.9 206 46.6
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.9e-33 146.7 199 47.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.2e-33 146.0 207 46.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.2e-33 146.0 198 45.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.2e-33 146.0 212 47.6
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.2e-33 146.0 210 47.1
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.5e-33 145.2 212 45.3
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 5.5e-33 145.2 206 46.6
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.1e-33 144.8 206 49.0
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 9.3e-33 144.4 198 46.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.7e-32 142.9 204 44.6
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 6.0e-32 141.7 212 45.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 7.9e-32 141.4 206 47.6
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 7.9e-32 141.4 211 47.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.8e-31 140.2 203 43.3
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.3e-31 139.8 208 45.7
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.3e-31 139.8 204 46.1
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.3e-31 139.8 207 45.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.0e-31 139.4 215 45.1
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 3.9e-31 139.0 203 45.8
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 3.9e-31 139.0 203 47.8
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 6.7e-31 138.3 198 44.9
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 8.7e-31 137.9 220 44.1
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.5e-30 137.1 206 43.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.5e-30 137.1 212 44.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.5e-30 136.3 209 46.9
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.3e-30 136.0 218 41.7
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 5.7e-30 135.2 173 49.7
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.4e-30 134.8 206 43.7
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 9.6e-30 134.4 209 44.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 9.6e-30 134.4 210 46.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.3e-29 134.0 210 43.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.6e-29 133.7 203 44.8
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.6e-29 133.7 209 43.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.6e-29 133.7 207 43.5
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.8e-29 132.9 180 47.2
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.8e-29 132.9 202 44.6
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.7e-29 132.5 200 45.0
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.8e-29 132.1 209 43.5
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-28 131.0 211 42.2
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.4e-28 130.6 213 44.1
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.4e-28 129.8 206 46.6
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.3e-28 128.6 209 46.4
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 6.9e-28 128.3 175 47.4
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 6.9e-28 128.3 210 45.7
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 9.0e-28 127.9 225 41.3
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 9.0e-28 127.9 217 39.6
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.2e-27 127.5 197 46.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-27 127.1 174 50.6
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-27 126.7 173 49.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-27 126.7 173 49.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.6e-27 126.3 212 43.4
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 5.9e-27 125.2 175 48.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 7.6e-27 124.8 214 40.7
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.0e-26 124.4 218 45.0
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.0e-26 124.4 209 45.0
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.0e-26 124.4 201 48.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-26 123.6 209 45.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.7e-26 123.6 215 41.9
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.2e-26 123.2 200 43.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 2.2e-26 123.2 205 46.8
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 2.2e-26 123.2 208 43.3
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.9e-26 122.9 204 43.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 6.5e-26 121.7 191 43.5
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 6.5e-26 121.7 213 39.9
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-25 120.9 212 42.5
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.4e-25 120.6 201 48.3
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.5e-25 119.8 200 43.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.5e-25 118.6 198 42.9
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.5e-25 118.6 198 42.9
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 7.2e-25 118.2 201 41.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.6e-24 117.1 198 42.4
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.6e-24 117.1 206 45.1
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 2.1e-24 116.7 225 36.0
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.7e-24 116.3 197 38.1
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-23 114.4 214 38.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.8e-23 113.6 198 43.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.8e-23 113.6 215 37.2
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.3e-23 113.2 75 77.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 3.0e-23 112.8 201 42.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.0e-23 112.8 222 34.2
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.0e-23 112.8 211 37.9
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 8.7e-23 111.3 217 35.9
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.5e-22 109.8 203 39.4
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.5e-22 109.8 224 38.8
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 9.7e-22 107.8 208 40.4
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.3e-21 107.5 224 39.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.7e-21 105.9 216 38.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.7e-21 105.9 225 36.9
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 6.3e-21 105.1 221 39.4
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.1e-20 104.4 90 68.9
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.8e-20 103.6 225 36.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.8e-20 103.6 218 39.4
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.4e-20 103.2 219 36.5
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.4e-20 103.2 207 36.7
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.3e-20 102.1 203 36.9
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 6.9e-20 101.7 223 38.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 6.9e-20 101.7 206 38.8
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.2e-19 100.9 231 36.4
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.5e-19 100.5 209 37.8
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.5e-19 100.5 192 42.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.0e-19 100.1 237 31.6
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.5e-19 99.0 192 34.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 7.7e-19 98.2 192 35.4
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 3.8e-18 95.9 216 37.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 5.0e-18 95.5 179 41.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 8.5e-18 94.7 204 34.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.1e-17 94.4 203 36.5
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.1e-17 94.4 203 37.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.4e-17 94.0 112 52.7
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.5e-17 93.2 221 36.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.2e-17 92.8 197 35.0
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.2e-17 92.8 191 36.1
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 5.5e-17 92.0 224 32.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-16 90.1 251 31.5
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.6e-16 89.4 209 34.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 4.6e-16 89.0 187 34.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 6.1e-16 88.6 216 33.8
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-15 87.4 196 32.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.3e-15 86.7 194 34.0
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-15 86.7 200 34.5
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-15 86.7 194 34.0
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-15 86.7 194 34.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 8.8e-15 84.7 255 30.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.8e-15 84.7 187 35.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.5e-14 84.0 211 33.6
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 4.3e-14 82.4 198 34.3
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 4.3e-14 82.4 198 34.3
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.3e-13 80.9 160 36.9
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.2e-13 80.1 208 32.2
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.8e-13 79.7 183 32.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-12 77.0 193 33.2
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.4e-12 76.6 204 31.4
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.1e-12 74.7 200 30.5
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-11 73.9 189 32.3
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.5e-11 73.9 189 32.3
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.9e-11 72.0 75 53.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.7e-10 70.5 204 32.4
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.2e-10 70.1 213 29.6
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.9e-10 69.7 201 31.8
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.7e-08 63.2 63 52.4
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 6.1e-08 62.0 171 33.3
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.0e-07 61.2 58 55.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.4e-07 60.8 58 55.2
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 2.3e-07 60.1 168 30.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.0e-07 59.7 186 31.2
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.1e-07 58.9 60 53.3
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 5.1e-07 58.9 232 25.0
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 8.8e-07 58.2 127 32.3
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.5e-06 57.4 211 29.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.0e-06 57.0 200 30.0


User provided reference genes

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