Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 0.0e+00 1283.9 751 100.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 0.0e+00 1229.5 790 92.9
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.1e-280 969.9 784 76.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.0e-278 963.4 760 79.3
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 5.3e-267 924.5 771 73.8
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.7e-202 709.5 802 55.5
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.5e-194 682.6 800 54.1
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.6e-186 657.1 800 53.0
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 7.9e-178 628.2 780 52.2
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.3e-177 626.7 800 51.4
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.2e-175 618.6 800 51.0
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.0e-161 573.2 552 63.4
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 5.5e-147 525.8 787 50.3
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.1e-131 474.9 844 43.6
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.4e-126 457.2 813 43.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.8e-121 441.0 818 43.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.6e-120 437.2 650 49.7
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 5.4e-118 429.5 808 44.7
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 2.7e-117 427.2 820 41.0
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 2.3e-116 424.1 774 46.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 3.3e-115 420.2 791 47.5
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 8.9e-113 412.1 807 40.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 5.7e-112 409.5 792 41.2
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 9.8e-112 408.7 834 39.8
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.4e-110 404.8 818 46.1
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 7.0e-110 402.5 792 40.4
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 9.2e-110 402.1 541 56.2
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.0e-108 398.7 822 41.0
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-108 398.3 791 41.7
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.5e-107 394.8 837 39.5
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-107 394.8 791 41.6
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.5e-107 394.0 797 41.4
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.6e-107 392.9 784 44.9
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.6e-106 390.2 779 45.3
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 6.2e-106 389.4 832 45.3
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 6.2e-106 389.4 786 45.7
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 2.3e-105 387.5 804 45.9
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 8.9e-105 385.6 816 45.3
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.2e-104 385.2 820 44.0
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.0e-104 384.4 449 55.0
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 7.5e-104 382.5 805 39.3
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.1e-102 378.6 812 37.1
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.0e-102 375.9 796 40.6
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.0e-101 374.4 815 39.6
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.7e-101 374.0 829 39.3
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.6e-100 369.0 783 42.5
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.5e-99 368.2 750 45.9
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-99 368.2 796 39.9
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 3.3e-99 367.1 811 38.7
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.1e-98 364.4 779 45.8
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 3.6e-98 363.6 823 37.8
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-97 362.1 784 42.2
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.8e-97 361.3 783 40.0
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 3.1e-97 360.5 822 42.1
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 4.0e-97 360.1 791 39.6
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.0e-96 357.8 811 36.3
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.8e-96 356.3 858 42.0
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 7.5e-96 355.9 809 43.0
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 9.8e-96 355.5 402 61.2
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 9.8e-96 355.5 844 38.5
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 9.8e-96 355.5 802 38.9
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.2e-95 354.4 818 38.6
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 6.4e-95 352.8 825 37.0
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.4e-94 350.9 848 42.9
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-93 348.2 796 39.1
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.0e-92 345.5 785 37.6
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.0e-92 345.5 831 44.2
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.3e-92 344.4 821 41.4
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.9e-91 341.3 850 43.3
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.3e-91 340.5 891 36.0
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.3e-91 340.5 829 38.2
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 4.3e-91 340.1 547 52.8
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 7.3e-91 339.3 808 38.4
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 3.6e-90 337.0 846 39.5
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 3.6e-90 337.0 757 37.9
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 3.6e-90 337.0 794 43.7
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 6.2e-90 336.3 801 39.6
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 8.1e-90 335.9 815 42.7
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.4e-89 335.1 846 42.4
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 5.2e-89 333.2 815 42.6
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 6.8e-89 332.8 801 37.7
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.6e-88 330.9 808 37.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 7.6e-88 329.3 475 58.7
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 9.9e-88 328.9 811 37.6
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.3e-87 328.6 515 55.1
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 2.9e-87 327.4 828 39.4
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 5.4e-86 323.2 687 42.1
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.2e-86 322.4 438 48.4
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.6e-85 321.6 809 37.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 3.5e-85 320.5 732 38.5
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 7.8e-85 319.3 809 36.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.9e-84 317.0 786 42.4
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.6e-82 311.6 789 39.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.4e-81 308.5 772 41.1
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-80 305.1 519 47.0
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.4e-80 303.9 756 37.2
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 3.4e-80 303.9 807 41.8
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 5.8e-80 303.1 827 39.9
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.3e-79 302.0 841 42.3
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.8e-79 300.4 825 36.4
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 3.5e-77 293.9 788 41.5
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 3.5e-77 293.9 767 37.0
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.6e-77 293.5 778 39.3
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.0e-76 292.4 995 32.0
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-76 292.0 473 50.3
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 1.7e-76 291.6 780 41.5
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.7e-76 291.6 802 40.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 3.0e-76 290.8 805 38.9
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 5.1e-76 290.0 783 41.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 5.1e-76 290.0 818 34.1
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 6.6e-76 289.7 669 42.8
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.3e-75 287.3 778 40.0
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.3e-75 287.3 780 35.6
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 7.3e-75 286.2 670 39.7
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 9.6e-75 285.8 776 40.1
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 2.1e-74 284.6 562 49.5
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 8.1e-74 282.7 781 38.5
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 3.4e-72 277.3 772 40.2
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 5.8e-72 276.6 808 37.0
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 4.9e-71 273.5 755 38.0
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.7e-69 267.7 804 39.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 4.6e-69 266.9 536 47.4
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.0e-68 265.8 790 36.7
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.5e-67 261.9 550 44.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 7.4e-67 259.6 537 47.5
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.6e-66 257.3 778 36.4
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 4.5e-64 250.4 303 52.1
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.8e-63 247.3 788 37.8
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-62 244.6 436 48.2
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 9.6e-59 232.6 534 42.9
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.1e-58 231.5 537 42.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.8e-57 228.4 840 37.4
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 6.9e-49 199.9 668 36.5
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.1e-44 183.7 176 61.4
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.6e-42 178.7 319 49.2
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.7e-42 177.6 550 34.2
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.4e-41 175.6 394 49.7
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.4e-36 159.1 120 74.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 5.1e-36 157.1 644 30.4
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.6e-35 154.8 807 29.5
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 7.2e-30 136.7 415 31.3
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.4e-28 132.5 99 72.7
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.3e-27 127.9 435 29.9
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 6.3e-26 123.6 421 31.1
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 8.2e-26 123.2 525 30.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.1e-25 122.9 428 28.7
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 9.1e-25 119.8 98 67.3
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.0e-24 118.6 176 45.5
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.9e-24 117.1 99 67.7
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 8.5e-23 113.2 366 36.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 6.1e-21 107.1 62 93.5
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.0e-20 104.4 275 35.3
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.7e-19 100.5 74 75.7
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.1e-17 96.3 67 77.6
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 7.7e-16 90.1 77 62.3
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 3.8e-15 87.8 463 27.9
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 2.1e-13 82.0 62 71.0
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.4e-12 79.3 411 26.3
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.2e-11 76.3 483 24.2
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-10 72.8 48 79.2
Peaxi162Scf00546g00526 Petunia axillaris HOM05D011732 ORTHO05D007063 2.8e-10 71.6 50 78.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-10 71.2 48 77.1
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.1e-09 68.2 57 61.4
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 2.0e-08 65.5 83 49.4
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-06 59.3 37 78.4
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.5e-06 58.5 37 75.7
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-06 58.2 38 73.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.2e-06 57.8 37 75.7
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 7.2e-06 57.0 95 35.8
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.2e-06 57.0 37 73.0


User provided reference genes

Program Settings