Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.3e-107 393.3 225 100.0
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.4e-106 387.9 225 95.1
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 4.9e-83 311.6 225 81.8
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.1e-69 265.8 231 74.5
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 4.4e-68 261.9 229 65.9
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 7.8e-65 251.1 154 94.2
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.9e-56 222.2 221 64.7
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.1e-56 221.9 224 61.2
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 5.1e-56 221.9 224 61.2
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.6e-55 218.4 213 61.0
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 8.4e-51 204.5 212 52.4
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 2.5e-47 193.0 219 54.3
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 5.3e-45 185.3 214 49.5
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.3e-43 180.6 214 46.7
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 2.2e-43 179.9 214 46.7
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 6.5e-43 178.3 221 48.4
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 7.9e-41 171.4 220 46.8
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 5.1e-40 168.7 211 47.4
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 8.7e-40 167.9 229 47.2
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 1.1e-39 167.5 220 49.1
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 2.1e-38 163.3 232 44.4
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 2.8e-38 162.9 227 44.5
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.4e-37 159.8 235 43.8
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.1e-37 159.5 235 43.8
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.3e-37 158.7 233 43.8
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.2e-36 157.5 240 42.1
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.6e-36 156.4 214 43.0
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 5.9e-36 155.2 236 43.2
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 5.9e-36 155.2 226 42.5
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.0e-35 154.5 230 44.8
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.3e-35 154.1 227 44.5
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.2e-35 153.3 236 42.8
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.9e-35 152.9 214 42.1
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.8e-35 152.5 195 48.2
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 3.8e-35 152.5 195 48.2
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 5.0e-35 152.1 220 42.3
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.1e-34 151.0 262 42.4
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 2.5e-34 149.8 246 41.5
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.5e-34 149.8 135 64.4
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 3.2e-34 149.4 228 47.4
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 3.2e-34 149.4 222 41.4
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.2e-34 149.4 222 44.1
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.2e-34 149.1 208 45.2
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.2e-34 149.1 136 74.3
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 5.5e-34 148.7 220 41.4
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 5.5e-34 148.7 233 40.8
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 7.2e-34 148.3 257 40.1
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 9.3e-34 147.9 220 42.3
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 2.7e-33 146.4 253 44.3
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 4.6e-33 145.6 232 45.3
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 7.9e-33 144.8 201 50.2
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 7.9e-33 144.8 209 42.1
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.8e-32 143.7 228 40.8
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 1.8e-32 143.7 217 42.4
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 5.1e-32 142.1 202 47.5
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 6.7e-32 141.7 223 42.2
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 6.7e-32 141.7 209 44.5
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.1e-31 141.0 211 45.0
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 1.5e-31 140.6 114 67.5
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.3e-31 139.4 189 44.4
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 9.7e-31 137.9 233 44.2
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 9.7e-31 137.9 222 41.9
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 1.3e-30 137.5 232 43.5
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.3e-30 137.5 204 43.6
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.6e-30 137.1 228 38.6
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.6e-30 137.1 222 38.7
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 2.8e-30 136.3 222 43.2
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 4.8e-30 135.6 207 44.0
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.4e-29 134.0 221 44.3
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 1.4e-29 134.0 209 45.0
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.4e-29 134.0 210 46.7
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 2.4e-29 133.3 210 42.4
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.4e-29 133.3 208 47.6
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 9.0e-29 131.3 232 42.7
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.2e-28 131.0 219 41.6
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.2e-28 131.0 223 41.3
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.2e-28 131.0 220 43.2
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 1.5e-28 130.6 191 42.9
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.6e-28 129.8 207 48.3
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 4.5e-28 129.0 232 42.7
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 7.7e-28 128.3 232 42.2
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 7.7e-28 128.3 211 40.8
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 7.7e-28 128.3 213 40.4
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 1.3e-27 127.5 187 43.3
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 1.3e-27 127.5 131 53.4
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 2.2e-27 126.7 173 42.2
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.4e-26 124.0 232 38.4
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 3.2e-26 122.9 165 49.7
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 3.6e-25 119.4 190 40.5
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.4e-24 117.5 97 62.9
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 3.0e-24 116.3 238 34.9
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 3.9e-24 115.9 225 42.7
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 3.9e-24 115.9 238 34.9
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 6.7e-24 115.2 231 38.1
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 1.3e-22 110.9 240 37.1
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 2.4e-21 106.7 174 39.1
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.7e-17 93.2 175 44.0
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 3.6e-17 92.8 183 37.7
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 1.8e-16 90.5 111 49.5
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 3.0e-16 89.7 189 37.0
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.9e-16 89.4 168 39.3
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.9e-16 89.4 172 37.8
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 6.7e-16 88.6 203 36.0
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 6.7e-16 88.6 203 36.0
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 6.7e-16 88.6 203 36.0
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 8.8e-16 88.2 185 39.5
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 1.1e-15 87.8 190 36.3
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.0e-15 87.0 189 36.0
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 3.3e-15 86.3 175 36.6
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 4.4e-15 85.9 86 54.7
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 4.4e-15 85.9 162 40.1
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 1.7e-14 84.0 186 38.2
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 1.4e-13 80.9 181 35.9
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 1.8e-13 80.5 181 37.6
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.8e-13 80.5 181 37.6
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 1.8e-13 80.5 181 37.6
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 1.8e-13 80.5 181 37.6
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 2.4e-13 80.1 98 46.9
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 4.1e-13 79.3 195 35.9
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 5.3e-13 79.0 113 43.4
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 9.1e-13 78.2 181 34.3
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.2e-12 77.8 198 39.9
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 2.6e-12 76.6 109 44.0
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 3.5e-12 76.3 114 43.9
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 3.5e-12 76.3 224 28.6
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 4.5e-12 75.9 174 42.5
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 5.9e-12 75.5 193 35.8
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.3e-11 74.3 185 33.5
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.2e-11 73.6 114 41.2
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 6.5e-11 72.0 129 42.6
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 2.2e-06 57.0 137 35.8


User provided reference genes

Program Settings