Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.9e-159 565.8 296 100.0
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.4e-156 553.9 296 97.3
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.5e-143 513.1 300 90.7
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 1.7e-75 287.0 293 61.4
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.5e-74 282.0 288 61.8
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.0e-72 277.7 299 59.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.8e-38 162.5 281 42.7
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.8e-38 162.5 281 42.7
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.6e-36 156.8 261 44.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.3e-35 154.5 231 43.7
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.2e-34 149.4 199 46.7
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.7e-33 146.7 302 38.4
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 2.7e-33 146.7 187 47.6
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 4.7e-33 146.0 300 37.0
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 8.0e-33 145.2 253 42.3
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 8.0e-33 145.2 300 40.3
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 1.0e-32 144.8 292 37.7
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.2e-30 137.1 288 38.5
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 4.8e-30 136.0 255 37.3
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 8.2e-30 135.2 249 36.9
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.4e-29 134.4 253 37.9
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.1e-29 133.3 258 38.4
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 4.1e-29 132.9 201 43.8
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.2e-28 131.3 279 35.1
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.7e-28 130.2 295 39.3
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.0e-27 128.3 279 36.9
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.7e-27 127.5 176 45.5
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 2.2e-27 127.1 286 34.3
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 2.9e-27 126.7 288 34.4
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.9e-27 126.7 205 40.5
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 3.8e-27 126.3 207 42.5
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 3.8e-27 126.3 286 37.8
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 6.5e-27 125.6 262 37.8
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 8.5e-27 125.2 278 35.6
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.1e-26 124.8 207 41.5
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.5e-26 124.4 286 37.8
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.5e-26 122.5 261 40.2
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 5.5e-26 122.5 287 36.2
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.2e-25 121.3 210 40.0
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.2e-25 121.3 291 37.5
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 1.2e-25 121.3 291 34.7
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.2e-25 121.3 197 41.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-25 120.9 190 43.7
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 2.1e-25 120.6 285 36.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.7e-25 120.2 307 33.6
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.1e-25 119.0 287 36.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.0e-24 118.2 273 37.4
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.4e-24 117.9 291 36.4
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.0e-24 116.7 223 39.5
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 5.2e-24 115.9 293 34.8
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 5.2e-24 115.9 285 35.8
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.6e-23 113.6 262 33.6
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 5.7e-23 112.5 237 36.7
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 9.8e-23 111.7 177 41.2
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 4.8e-22 109.4 291 34.7
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 6.3e-22 109.0 197 38.1
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.8e-21 107.5 311 33.1
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.8e-21 107.5 185 39.5
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.1e-21 106.7 153 47.7
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 5.4e-21 105.9 200 37.5
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 7.0e-21 105.5 156 47.4
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 7.0e-21 105.5 155 45.8
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 9.1e-21 105.1 192 38.0
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.6e-20 104.4 188 41.5
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.0e-20 104.0 184 37.0
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.0e-20 104.0 184 37.0
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 2.7e-20 103.6 185 40.0
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 7.7e-20 102.1 300 32.0
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 1.3e-19 101.3 208 37.0
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.9e-19 100.1 192 37.5
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.5e-18 97.8 276 31.2
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 2.5e-18 97.1 221 34.8
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.2e-18 96.7 303 31.0
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 3.2e-18 96.7 182 36.8
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 5.5e-18 95.9 233 35.6
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 9.5e-18 95.1 267 31.5
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.2e-17 94.7 191 37.7
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 2.8e-17 93.6 180 35.0
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 4.7e-17 92.8 252 31.0
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.0e-17 92.0 177 35.6
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 8.0e-17 92.0 181 37.0
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 1.0e-16 91.7 182 36.8
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 1.4e-16 91.3 200 34.5
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.8e-16 90.9 191 36.6
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 6.8e-16 89.0 184 33.7
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 8.8e-16 88.6 260 31.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.8e-16 88.6 212 35.4
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.2e-15 88.2 225 33.8
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.0e-15 87.4 234 32.9
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 5.7e-15 85.9 185 35.1
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 9.8e-15 85.1 183 37.2
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 2.2e-14 84.0 211 32.2
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 2.2e-14 84.0 319 29.2
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 2.8e-14 83.6 149 40.3
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.4e-13 80.5 181 33.7
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 3.1e-13 80.1 188 29.8
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 5.4e-13 79.3 192 33.9
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.6e-12 77.8 171 36.8
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.6e-12 77.8 204 33.3
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.0e-12 77.4 184 34.8
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.7e-12 77.0 184 35.3
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 5.9e-12 75.9 192 31.8
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.3e-11 74.7 276 27.2
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.3e-11 73.9 182 33.5
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.9e-11 73.6 179 30.7
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 3.8e-11 73.2 174 33.3
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 5.0e-11 72.8 209 34.0
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 6.6e-11 72.4 172 34.9
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.1e-10 71.6 164 34.8
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.1e-10 71.6 209 29.7
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.1e-10 71.6 263 28.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.1e-10 71.6 154 33.8
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.5e-10 71.2 188 30.9
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.5e-10 70.5 190 33.7
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 2.5e-10 70.5 172 34.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.5e-10 70.5 177 33.3
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 2.5e-10 70.5 188 35.6
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 3.3e-10 70.1 178 32.0
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.3e-10 70.1 178 32.0
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 5.6e-10 69.3 171 34.5
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 9.5e-10 68.6 280 27.9
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.1e-09 67.4 178 34.3
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 2.8e-09 67.0 153 37.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 3.6e-09 66.6 167 33.5
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.7e-09 66.2 202 32.2
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 8.0e-09 65.5 189 32.3
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 1.0e-08 65.1 206 32.0
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.0e-08 65.1 179 31.3
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 1.4e-08 64.7 176 31.8
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 2.3e-08 63.9 189 31.2
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 2.3e-08 63.9 189 31.2
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 2.3e-08 63.9 215 27.0
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.0e-08 63.5 301 30.6
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 3.0e-08 63.5 160 37.5
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 4.0e-08 63.2 184 29.3
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 5.2e-08 62.8 189 30.7
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 6.8e-08 62.4 189 31.2
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.5e-07 61.2 190 30.5
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.5e-07 61.2 175 30.3
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.5e-07 61.2 347 26.8
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 5.7e-07 59.3 258 31.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 7.5e-07 58.9 204 28.9
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.7e-06 57.8 180 30.0
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 4.9e-06 56.2 175 30.3
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 8.3e-06 55.5 147 31.3


User provided reference genes

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