Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.2e-161 573.5 399 100.0
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 7.7e-156 554.3 399 97.7
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 5.0e-147 525.0 397 95.5
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 3.6e-113 412.5 410 80.7
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.8e-112 408.3 413 70.7
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.5e-111 407.1 416 72.4
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 8.1e-81 305.1 313 65.2
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 5.4e-77 292.4 331 58.0
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 4.2e-61 239.6 332 51.2
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.8e-56 224.2 319 53.0
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.3e-56 222.6 316 45.6
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.7e-54 217.6 316 50.9
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.8e-54 216.5 334 51.2
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 7.9e-52 208.8 331 50.5
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-51 207.6 332 42.2
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.3e-51 207.2 328 51.5
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.5e-50 203.8 337 46.9
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 9.7e-50 201.8 332 49.1
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 6.3e-49 199.1 327 49.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.8e-48 197.6 319 50.5
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.4e-48 197.2 331 47.7
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 3.1e-48 196.8 343 44.9
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.9e-47 192.6 326 48.2
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.3e-46 191.4 331 45.3
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 2.2e-46 190.7 325 48.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 5.0e-46 189.5 336 47.9
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.9e-45 187.6 316 41.5
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 3.2e-45 186.8 332 49.4
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 5.5e-45 186.0 310 47.4
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 4.6e-44 183.0 338 46.7
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 7.9e-44 182.2 354 44.6
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.0e-43 181.8 328 46.3
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 3.9e-43 179.9 327 46.5
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 4.3e-42 176.4 329 44.1
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 2.2e-41 174.1 334 42.2
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.7e-41 173.3 315 46.0
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.2e-39 168.3 319 46.1
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.0e-38 165.2 220 46.8
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.7e-38 164.5 315 44.8
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.8e-38 163.3 318 36.2
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.2e-37 160.2 310 44.2
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 4.7e-36 156.4 326 41.7
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.7e-36 156.4 317 42.6
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.7e-36 156.4 340 38.8
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 6.1e-36 156.0 325 42.8
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.0e-35 153.7 310 37.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 3.9e-35 153.3 323 43.7
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.0e-34 151.0 316 45.3
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.3e-33 148.3 331 34.4
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.7e-33 147.9 261 50.2
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 6.3e-33 146.0 309 41.7
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 8.2e-33 145.6 321 43.3
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 8.2e-33 145.6 328 43.6
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.4e-32 144.8 327 41.6
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.8e-32 144.4 323 42.1
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 3.1e-32 143.7 192 45.8
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 7.0e-32 142.5 323 42.1
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 2.0e-31 141.0 329 40.1
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.6e-31 140.6 336 42.6
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 7.7e-31 139.0 328 42.4
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.0e-30 138.7 333 42.6
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.3e-30 138.3 310 41.3
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.2e-30 137.5 336 43.2
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.5e-29 134.8 330 40.9
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.5e-29 134.0 223 48.9
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 3.2e-29 133.7 316 35.1
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 7.2e-29 132.5 329 41.9
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.6e-28 131.3 315 42.9
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 5.7e-26 122.9 331 40.2
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.5e-26 122.5 330 38.8
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 9.7e-26 122.1 312 40.4
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 2.8e-25 120.6 335 39.7
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 3.7e-25 120.2 310 40.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 6.3e-25 119.4 331 39.3
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 1.4e-24 118.2 325 36.9
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.1e-24 117.1 327 39.1
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.7e-23 114.0 308 40.3
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 2.9e-22 110.5 170 44.1
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 8.5e-22 109.0 81 61.7
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 1.5e-21 108.2 321 29.6
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 1.5e-21 108.2 181 39.8
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 5.5e-21 106.3 323 29.7
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 1.6e-20 104.8 169 38.5
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 6.1e-20 102.8 323 31.0
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 4.0e-19 100.1 323 30.0
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 5.2e-19 99.8 320 30.3
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 6.8e-19 99.4 201 37.8
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 8.8e-19 99.0 213 36.6
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.5e-18 98.2 306 37.3
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 5.7e-18 96.3 312 34.3
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 7.5e-18 95.9 200 39.5
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 7.5e-18 95.9 188 35.1
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 2.2e-17 94.4 332 28.0
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.8e-17 94.0 320 29.4
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.4e-16 90.9 182 36.8
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 4.1e-16 90.1 146 41.1
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 5.4e-16 89.7 335 35.5
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.2e-15 88.6 77 50.6
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 2.0e-15 87.8 310 27.1
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 2.7e-15 87.4 342 28.4
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 7.7e-15 85.9 242 40.9
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 7.7e-15 85.9 132 40.2
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.0e-14 85.5 329 36.8
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.2e-14 84.3 142 35.9
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 2.9e-14 84.0 146 35.6
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 6.5e-14 82.8 338 34.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.1e-13 82.0 86 46.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.5e-13 80.9 120 41.7
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 2.5e-13 80.9 164 34.8
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 4.2e-13 80.1 169 38.5
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 5.5e-13 79.7 138 41.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 7.2e-13 79.3 333 36.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.2e-12 78.6 168 39.3
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 2.3e-11 74.3 75 46.7
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.0e-11 73.9 89 48.3
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 1.5e-10 71.6 72 45.8
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.5e-10 71.6 100 45.0
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.0e-10 71.2 77 41.6
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 4.4e-10 70.1 142 35.9
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 9.8e-10 68.9 62 50.0
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 1.7e-09 68.2 76 40.8
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 2.2e-09 67.8 73 43.8
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 4.9e-09 66.6 148 38.5
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 4.9e-09 66.6 82 41.5
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 6.3e-09 66.2 80 43.8
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 6.3e-09 66.2 46 63.0
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 1.4e-08 65.1 84 41.7
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 1.4e-08 65.1 73 39.7
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 3.1e-08 63.9 73 43.8
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.2e-08 62.4 43 62.8
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 9.2e-08 62.4 77 39.0
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 1.2e-07 62.0 79 40.5
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 1.6e-07 61.6 79 41.8
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 1.6e-07 61.6 79 40.5
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 2.7e-07 60.8 70 42.9
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 3.5e-07 60.5 88 42.0
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 3.5e-07 60.5 145 34.5
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.5e-07 60.5 47 63.8
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 2.3e-06 57.8 96 32.3
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 5.0e-06 56.6 44 61.4
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 6.6e-06 56.2 76 42.1
CDE04G0657 Ceratophyllum demersum HOM05D001903 ORTHO05D001847 6.6e-06 56.2 77 37.7
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 6.6e-06 56.2 88 38.6


User provided reference genes

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