Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.6e-140 502.3 297 100.0
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 2.3e-133 479.2 297 97.3
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 8.0e-126 454.1 297 86.9
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.5e-124 449.9 388 74.7
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.7e-121 439.1 332 78.3
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 7.3e-119 431.0 297 89.6
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 5.6e-103 378.3 299 74.9
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.9e-99 365.9 298 71.1
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 3.2e-98 362.5 297 70.0
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 7.1e-98 361.3 297 70.4
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 7.1e-98 361.3 280 73.9
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 2.7e-97 359.4 297 69.4
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 4.6e-97 358.6 297 69.4
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 7.8e-97 357.8 297 70.0
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.0e-96 355.9 297 68.0
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 6.6e-96 354.8 297 69.0
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 8.7e-96 354.4 297 69.0
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.1e-95 354.0 305 67.2
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 9.6e-95 350.9 297 67.3
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.6e-94 350.1 297 68.0
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.6e-94 350.1 297 67.7
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.1e-94 349.7 297 69.4
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.1e-94 349.7 297 69.4
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 2.1e-94 349.7 297 66.7
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.1e-94 349.7 297 68.0
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.1e-94 349.7 297 68.4
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.6e-94 349.0 297 68.7
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.6e-94 349.0 297 67.7
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.1e-93 347.4 297 68.4
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 3.1e-93 345.9 297 67.3
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 4.0e-93 345.5 297 66.3
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.3e-93 345.1 297 68.0
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 6.9e-93 344.7 315 65.1
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.2e-92 344.0 298 67.8
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 9.9e-92 340.9 297 67.0
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.2e-91 339.7 305 68.2
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.2e-90 335.9 296 66.9
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 4.2e-90 335.5 298 66.4
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 7.1e-90 334.7 297 64.0
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 9.3e-90 334.3 261 72.0
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 9.3e-90 334.3 274 69.3
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.7e-89 332.8 298 66.8
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 7.9e-89 331.3 388 55.7
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 7.9e-89 331.3 296 66.2
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.8e-88 330.1 298 65.8
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 3.9e-88 328.9 297 63.6
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 6.7e-88 328.2 298 64.4
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.5e-87 326.2 301 65.1
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 2.5e-87 326.2 360 57.2
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 2.5e-87 326.2 296 63.9
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 4.3e-87 325.5 297 65.3
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 5.6e-87 325.1 328 60.1
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.1e-86 323.2 297 65.0
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.1e-86 323.2 297 65.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 4.8e-86 322.0 301 63.5
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 6.2e-86 321.6 297 64.0
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 6.2e-86 321.6 297 64.6
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.4e-85 320.5 297 64.6
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.8e-85 320.1 297 64.0
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 3.1e-85 319.3 301 63.5
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 4.0e-85 318.9 297 64.3
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 9.0e-85 317.8 297 63.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 9.0e-85 317.8 298 64.1
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 4.5e-84 315.5 305 63.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 9.9e-84 314.3 298 62.8
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 9.9e-84 314.3 298 62.8
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.7e-83 313.5 259 69.5
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 2.9e-83 312.8 297 63.6
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.4e-83 311.6 297 62.6
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.4e-83 311.6 297 62.6
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.4e-83 311.6 297 62.6
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 6.4e-83 311.6 297 62.0
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.1e-82 310.8 297 61.6
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-82 310.1 296 63.2
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 2.5e-82 309.7 301 62.8
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.2e-82 309.3 301 65.4
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.6e-81 307.0 297 62.0
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 2.7e-81 306.2 321 59.8
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 2.7e-81 306.2 267 65.9
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 7.9e-81 304.7 270 65.2
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.3e-80 303.9 298 61.1
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.8e-80 303.5 298 61.1
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.3e-80 303.1 297 61.3
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 8.7e-80 301.2 264 65.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.9e-79 300.1 300 59.7
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 3.3e-79 299.3 297 61.3
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.3e-78 297.4 299 63.5
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.7e-78 295.8 255 65.5
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.1e-77 294.3 261 62.8
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.4e-77 293.9 306 59.2
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 2.4e-77 293.1 313 59.1
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.6e-76 289.7 298 60.1
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 4.5e-76 288.9 297 58.2
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.2e-75 286.6 296 58.4
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.9e-75 286.2 296 58.1
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 4.9e-75 285.4 255 62.4
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.4e-74 283.9 300 59.7
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.7e-73 279.6 274 61.7
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.6e-73 278.9 301 56.8
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 6.0e-73 278.5 221 73.8
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.3e-72 276.6 375 50.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 8.7e-72 274.6 257 61.1
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.5e-71 273.1 215 71.6
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 4.8e-70 268.9 199 77.4
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 3.4e-68 262.7 252 59.9
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.9e-66 256.9 177 84.7
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.8e-64 250.4 241 63.5
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.1e-63 247.7 298 53.7
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 5.3e-61 238.8 150 89.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 7.7e-60 235.0 184 73.9
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.3e-59 234.2 178 74.2
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 2.9e-59 233.0 299 52.5
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 4.1e-53 212.6 184 70.7
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.7e-52 208.4 307 51.1
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 3.8e-51 206.1 185 67.6
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 6.7e-48 195.3 131 80.9
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.0e-47 193.7 252 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.6e-47 193.4 252 46.0
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 2.8e-46 189.9 201 53.7
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 7.7e-44 181.8 275 44.7
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.5e-42 176.8 180 53.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.2e-38 163.7 199 45.7
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 2.0e-36 157.1 191 48.7
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.7e-36 156.8 180 54.4
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 8.0e-33 145.2 178 51.1
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.8e-32 144.1 120 65.0
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 3.4e-31 139.8 121 64.5
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 8.3e-30 135.2 79 94.9
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 5.9e-28 129.0 192 41.7
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 6.1e-25 119.0 130 54.6
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 5.9e-20 102.4 176 42.0
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.5e-18 97.8 121 49.6
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.6e-17 93.2 98 56.1
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.9e-14 83.6 108 47.2
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 6.4e-14 82.4 108 46.3
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 4.1e-13 79.7 108 46.3
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.1e-10 71.6 68 54.4
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 4.3e-10 69.7 204 26.5
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 4.0e-08 63.2 188 30.9
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.7e-06 56.6 62 48.4
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 6.4e-06 55.8 55 50.9
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 6.4e-06 55.8 55 50.9
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 6.4e-06 55.8 55 50.9


User provided reference genes

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