Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 0.0e+00 1176.8 597 100.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.1e-307 1059.3 597 92.3
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.1e-280 969.5 598 84.4
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 2.6e-272 941.8 582 85.1
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 3.7e-263 911.4 596 78.2
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 3.5e-261 904.8 603 76.9
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.8e-260 901.4 597 77.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.8e-260 901.4 597 77.7
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.2e-259 898.3 597 76.9
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 4.2e-259 897.9 510 88.6
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 5.5e-259 897.5 597 76.7
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 7.2e-259 897.1 598 77.3
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.7e-258 895.2 598 79.4
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 4.0e-257 891.3 598 76.4
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 6.8e-257 890.6 598 76.6
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.3e-255 886.3 598 76.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.1e-254 881.3 598 74.9
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 5.4e-254 880.9 597 75.0
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.2e-253 879.8 598 74.9
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 4.5e-253 877.9 598 75.3
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 6.5e-252 874.0 597 74.5
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 7.2e-251 870.5 598 74.7
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 8.0e-250 867.1 600 73.8
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.0e-249 866.7 599 74.1
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.3e-249 865.5 598 73.9
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 4.0e-249 864.8 597 72.9
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.0e-248 862.4 600 74.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.3e-247 859.8 598 73.6
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.2e-247 859.0 600 73.7
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.9e-247 857.8 598 73.2
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.4e-246 855.5 597 73.2
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 3.1e-246 855.1 597 73.5
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.2e-245 853.2 594 74.2
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 2.7e-245 852.0 597 73.0
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 7.8e-245 850.5 607 72.2
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.3e-244 849.7 594 73.2
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 8.6e-244 847.0 573 75.0
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.1e-243 846.7 602 72.6
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 8.0e-242 840.5 598 71.1
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 6.8e-241 837.4 597 71.4
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.6e-240 835.5 598 71.6
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 4.9e-239 831.2 608 71.1
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.4e-238 829.7 597 71.0
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.8e-238 829.3 597 71.2
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 2.4e-238 828.9 598 70.7
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 5.4e-238 827.8 603 71.0
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 5.4e-238 827.8 598 72.2
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 4.6e-237 824.7 603 70.3
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 7.8e-237 823.9 597 71.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 7.8e-237 823.9 603 70.6
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.7e-236 822.8 597 71.5
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.7e-236 822.8 597 71.4
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.3e-236 822.4 597 72.2
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 4.3e-235 818.1 597 70.5
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.6e-234 816.2 596 71.3
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 8.0e-234 813.9 595 70.4
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.8e-233 812.8 597 70.2
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.3e-233 812.4 599 70.1
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 4.4e-232 808.1 600 70.3
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 4.9e-231 804.7 713 61.7
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 8.3e-231 803.9 600 70.0
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.2e-230 802.0 601 70.0
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 9.2e-230 800.4 600 69.8
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.2e-229 800.0 602 69.1
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.7e-228 796.2 644 65.8
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.1e-227 793.5 539 74.4
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.3e-227 791.6 632 66.9
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 5.6e-227 791.2 604 71.5
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 7.3e-227 790.8 597 68.5
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.2e-226 790.0 601 67.9
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.1e-226 789.3 602 68.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.1e-225 785.4 597 68.2
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 5.2e-225 784.6 602 68.1
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.0e-224 782.7 532 77.1
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 7.5e-224 780.8 570 68.9
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 2.2e-223 779.2 602 67.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.4e-222 776.5 595 70.3
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.4e-222 775.8 599 68.3
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 7.1e-222 774.2 510 76.3
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.0e-220 770.4 601 67.2
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 1.9e-219 766.1 599 66.8
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.3e-219 765.4 571 69.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 9.5e-219 763.8 573 68.4
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 1.2e-218 763.5 610 67.4
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.7e-215 753.1 540 72.6
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 4.1e-214 748.4 644 62.1
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 2.1e-213 746.1 598 66.2
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 4.2e-206 721.8 491 74.9
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.2e-205 720.3 546 67.6
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.1e-202 709.5 582 64.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 2.2e-199 699.5 605 64.1
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 1.2e-197 693.7 542 66.2
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.0e-196 690.6 488 71.1
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.1e-195 687.2 555 63.6
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.0e-188 664.1 563 60.6
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 1.4e-182 643.7 565 63.2
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.9e-182 643.3 511 65.6
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.5e-179 633.6 492 64.0
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 2.2e-178 629.8 550 57.3
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.1e-177 625.9 554 58.7
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.8e-175 619.0 554 58.7
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 6.9e-169 598.2 470 64.5
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 4.2e-166 589.0 597 56.8
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 8.2e-162 574.7 503 63.0
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.4e-161 573.2 353 83.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.4e-156 557.4 373 79.4
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 9.4e-150 534.6 530 53.6
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 2.7e-149 533.1 532 53.8
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 2.3e-148 530.0 322 82.9
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 4.5e-144 515.8 322 80.1
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.4e-132 477.6 340 74.1
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.4e-123 446.4 529 42.9
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 5.8e-115 419.1 247 86.2
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-108 398.3 259 77.6
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.4e-108 397.9 411 56.9
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 4.0e-108 396.4 491 48.1
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 6.4e-98 362.5 228 79.8
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 9.6e-94 348.6 205 84.9
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 5.2e-92 342.8 218 75.2
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 3.5e-88 330.1 217 72.8
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 1.1e-86 325.1 210 72.4
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.6e-86 322.8 212 72.2
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 1.7e-82 311.2 188 81.9
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.2e-67 261.9 527 34.3
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.0e-60 235.7 134 78.4
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 2.0e-51 208.0 297 45.1
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 3.6e-48 197.2 187 57.8
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 8.8e-47 192.6 221 49.3
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 2.8e-45 187.6 508 30.3
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.0e-39 169.1 125 67.2
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.0e-39 169.1 125 67.2
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.4e-39 168.7 166 54.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 5.7e-38 163.3 123 69.9
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.7e-37 161.8 134 61.9
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.0e-35 154.8 404 31.4
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 4.2e-33 147.1 114 72.8
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.1e-25 122.5 69 82.6
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 5.5e-25 120.2 151 49.0
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.3e-21 109.0 66 86.4
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 2.2e-21 108.2 68 82.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.4e-20 104.8 64 79.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 5.4e-20 103.6 84 61.9
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.0e-18 99.4 52 90.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.3e-18 99.0 141 42.6
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.5e-17 94.7 57 84.2
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.2e-17 94.0 119 48.7
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 3.6e-16 90.9 106 52.8
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.5e-14 83.2 86 50.0
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 9.8e-14 82.8 162 34.6
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-12 79.3 58 70.7
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 3.2e-12 77.8 46 80.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-10 72.8 61 60.7
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 4.7e-08 63.9 51 60.8
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 5.2e-07 60.5 72 43.1
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 1.5e-06 58.9 43 67.4
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 2.0e-06 58.5 51 58.8
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 9.8e-06 56.2 38 71.1


User provided reference genes

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