Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 1.3e-68 263.1 144 100.0
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 3.3e-64 248.4 144 95.1
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 4.5e-58 228.0 145 85.5
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.9e-57 225.3 144 84.0
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 9.8e-53 210.3 141 78.0
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 4.1e-43 178.3 95 97.9
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.9e-40 169.5 122 76.2
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 2.8e-39 165.6 152 60.5
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.8e-38 162.9 146 58.9
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 5.2e-38 161.4 141 60.3
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 1.5e-37 159.8 130 62.3
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 2.6e-37 159.1 131 61.1
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 7.5e-37 157.5 142 59.9
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 7.5e-37 157.5 144 58.3
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 7.5e-37 157.5 140 57.1
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 9.9e-37 157.1 146 56.8
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 4.9e-36 154.8 145 57.2
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 4.9e-36 154.8 145 57.9
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.4e-35 153.3 151 56.3
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 3.2e-35 152.1 145 55.9
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.4e-35 151.4 146 56.8
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 5.4e-35 151.4 146 56.2
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 1.6e-34 149.8 145 55.2
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.1e-34 149.4 144 56.2
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.7e-34 149.1 144 56.9
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.5e-34 148.7 142 55.6
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 7.8e-34 147.5 148 57.4
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 1.0e-33 147.1 140 56.4
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 3.0e-33 145.6 144 54.2
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 3.0e-33 145.6 145 54.5
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 3.0e-33 145.6 139 55.4
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 5.1e-33 144.8 145 55.2
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 8.6e-33 144.1 138 56.5
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 1.1e-32 143.7 144 52.8
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 1.1e-32 143.7 144 56.2
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 9.5e-32 140.6 144 52.1
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 1.2e-31 140.2 128 56.2
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 1.6e-31 139.8 145 54.5
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 1.6e-31 139.8 141 52.5
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 2.1e-31 139.4 141 54.6
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 2.1e-31 139.4 128 57.8
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 2.8e-31 139.0 140 55.0
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 6.2e-31 137.9 148 57.4
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 6.2e-31 137.9 143 53.1
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 2.4e-30 136.0 142 56.3
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 3.1e-30 135.6 133 57.9
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 4.0e-30 135.2 144 53.5
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 6.8e-30 134.4 141 53.9
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 6.8e-30 134.4 137 51.8
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 8.9e-30 134.0 168 47.0
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 8.9e-30 134.0 133 54.1
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 1.2e-29 133.7 145 55.9
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 1.5e-29 133.3 142 55.6
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 2.0e-29 132.9 142 54.2
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 2.0e-29 132.9 168 46.4
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 2.6e-29 132.5 167 49.1
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 3.4e-29 132.1 141 52.5
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 3.4e-29 132.1 138 53.6
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 4.4e-29 131.7 138 52.2
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 7.6e-29 131.0 138 57.2
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 9.9e-29 130.6 147 55.1
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 1.7e-28 129.8 141 51.1
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.7e-28 129.8 138 51.4
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.9e-28 129.0 139 52.5
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 2.9e-28 129.0 144 50.7
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 6.4e-28 127.9 138 51.4
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 1.4e-27 126.7 137 54.0
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.4e-27 126.7 144 47.2
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 2.4e-27 125.9 140 50.0
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 9.2e-27 124.0 138 50.0
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 1.6e-26 123.2 141 48.9
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 3.5e-26 122.1 139 53.2
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 6.0e-26 121.3 141 48.9
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 3.9e-25 118.6 146 47.9
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 5.1e-25 118.2 89 68.5
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 6.6e-25 117.9 89 68.5
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.1e-24 117.1 130 55.4
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 1.1e-24 117.1 139 48.2
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 1.1e-24 117.1 125 50.4
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 1.5e-24 116.7 137 46.0
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 3.3e-24 115.5 134 48.5
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 1.2e-23 113.6 89 64.0
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.6e-23 113.2 144 52.8
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 2.1e-23 112.8 142 52.8
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 2.8e-23 112.5 142 52.8
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 8.1e-23 110.9 142 52.1
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 1.1e-22 110.5 88 63.6
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.8e-22 109.8 88 64.8
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 3.1e-22 109.0 142 50.7
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 3.1e-22 109.0 146 42.5
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 6.9e-22 107.8 77 70.1
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 1.2e-21 107.1 135 54.8
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.2e-21 107.1 77 68.8
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.2e-21 107.1 117 50.4
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 1.2e-21 107.1 121 50.4
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 1.2e-21 107.1 121 47.9
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.5e-21 106.7 117 49.6
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 3.4e-21 105.5 89 61.8
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 5.8e-21 104.8 89 59.6
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 1.3e-20 103.6 166 39.8
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 3.8e-20 102.1 117 49.6
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 4.9e-20 101.7 124 49.2
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 4.9e-20 101.7 90 60.0
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 1.4e-19 100.1 121 47.9
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.9e-19 99.8 127 48.0
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 4.2e-19 98.6 121 45.5
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 9.3e-19 97.4 127 46.5
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.6e-18 96.7 110 49.1
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.3e-17 93.6 138 38.4
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 7.3e-16 87.8 70 61.4
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.8e-15 85.9 89 58.4
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 6.2e-15 84.7 119 45.4
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 1.4e-14 83.6 89 57.3
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 6.9e-14 81.3 88 56.8
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 3.8e-12 75.5 141 36.9
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 9.3e-11 70.9 142 36.6
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.6e-10 70.1 85 45.9
Nitab4.5_0001041g0050 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.0e-09 65.9 36 91.7
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 3.9e-09 65.5 141 36.9
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 3.9e-09 65.5 141 34.0
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 8.7e-09 64.3 142 35.9
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 8.7e-09 64.3 143 33.6
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 1.5e-08 63.5 145 34.5
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.9e-08 63.2 146 32.9
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 4.3e-08 62.0 138 30.4
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 7.4e-08 61.2 83 44.6
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 7.4e-08 61.2 136 33.8
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 7.4e-08 61.2 72 51.4
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 1.3e-07 60.5 136 33.8
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.6e-07 60.1 83 44.6
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.6e-07 60.1 135 32.6
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.6e-07 60.1 135 33.3
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.1e-07 59.7 154 29.2
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 2.8e-07 59.3 138 30.4
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 4.8e-07 58.5 135 32.6
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 6.2e-07 58.2 147 29.3
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 6.2e-07 58.2 147 32.7
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 6.2e-07 58.2 143 31.5
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 8.1e-07 57.8 148 31.8
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 1.4e-06 57.0 140 31.4
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 1.4e-06 57.0 146 32.2
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 1.4e-06 57.0 135 31.9
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.8e-06 56.6 144 29.2
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.8e-06 56.6 135 31.1
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 2.4e-06 56.2 63 49.2
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 2.4e-06 56.2 146 33.6
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 2.4e-06 56.2 144 31.2
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 3.1e-06 55.8 164 27.4
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 4.0e-06 55.5 135 30.4
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 4.0e-06 55.5 135 31.1
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 5.3e-06 55.1 140 32.1
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 6.9e-06 54.7 108 43.5
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 6.9e-06 54.7 149 28.9
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 6.9e-06 54.7 141 32.6
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 6.9e-06 54.7 142 35.2
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 9.0e-06 54.3 137 30.7
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 9.0e-06 54.3 135 31.1
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 9.0e-06 54.3 145 28.3
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 9.0e-06 54.3 141 31.9


User provided reference genes

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