Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 5.3e-60 234.2 120 100.0
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 5.8e-59 230.7 120 98.3
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 3.8e-58 228.0 120 96.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 4.8e-53 211.1 120 89.2
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 8.8e-47 190.3 117 84.6
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.2e-45 185.7 117 82.1
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 4.7e-40 167.9 125 71.2
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 3.0e-39 165.2 126 72.2
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 3.0e-39 165.2 126 72.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.5e-38 162.9 110 75.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.0e-38 162.5 110 75.5
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 2.6e-38 162.2 124 68.5
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.6e-38 162.2 119 72.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.3e-38 161.8 110 73.6
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.4e-38 161.4 123 71.5
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.4e-38 161.4 125 70.4
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 5.7e-38 161.0 122 69.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.7e-38 161.0 125 68.0
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 7.4e-38 160.6 124 71.0
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 7.4e-38 160.6 129 70.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 7.4e-38 160.6 129 70.5
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 9.7e-38 160.2 124 70.2
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.3e-37 159.8 110 73.6
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.3e-37 159.8 118 71.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.3e-37 159.8 122 68.9
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.2e-37 159.1 110 74.5
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 2.8e-37 158.7 110 73.6
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.8e-37 158.7 119 69.7
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.7e-37 158.3 129 69.8
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 3.7e-37 158.3 126 66.7
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.7e-37 158.3 110 74.5
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 3.7e-37 158.3 109 73.4
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.8e-37 157.9 122 70.5
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.8e-37 157.9 129 70.5
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 4.8e-37 157.9 110 73.6
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 6.3e-37 157.5 119 69.7
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 6.3e-37 157.5 110 74.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 6.3e-37 157.5 123 68.3
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 6.3e-37 157.5 110 72.7
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 6.3e-37 157.5 102 78.4
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 8.2e-37 157.1 110 71.8
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 8.2e-37 157.1 110 71.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.2e-37 157.1 126 67.5
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.2e-37 157.1 126 67.5
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 8.2e-37 157.1 126 67.5
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.1e-36 156.8 111 74.8
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-36 156.8 119 71.4
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.1e-36 156.8 110 73.6
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.1e-36 156.8 111 74.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.1e-36 156.8 110 70.0
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.4e-36 156.4 118 67.8
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.4e-36 156.4 123 69.1
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.4e-36 156.4 110 72.7
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.8e-36 156.0 111 71.2
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.8e-36 156.0 120 70.0
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.8e-36 156.0 111 73.9
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.8e-36 156.0 103 73.8
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.8e-36 156.0 103 76.7
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.4e-36 155.6 110 72.7
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 3.1e-36 155.2 112 73.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 3.1e-36 155.2 112 73.2
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.1e-36 155.2 109 71.6
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.1e-36 155.2 110 72.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 4.1e-36 154.8 110 70.9
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.1e-36 154.8 111 72.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 4.1e-36 154.8 103 75.7
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.3e-36 154.5 126 67.5
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 5.3e-36 154.5 110 70.9
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 5.3e-36 154.5 114 71.9
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.3e-36 154.5 122 70.5
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.3e-36 154.5 125 69.6
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.3e-36 154.5 125 69.6
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 5.3e-36 154.5 110 71.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 7.0e-36 154.1 110 72.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 9.1e-36 153.7 111 73.0
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 9.1e-36 153.7 110 72.7
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 9.1e-36 153.7 118 67.8
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.2e-35 153.3 111 73.0
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.2e-35 153.3 112 73.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.2e-35 153.3 112 73.2
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.2e-35 153.3 111 71.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.2e-35 153.3 110 71.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.5e-35 152.9 110 73.6
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.5e-35 152.9 123 65.9
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.5e-35 152.9 130 65.4
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.5e-35 152.9 124 66.9
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.5e-35 152.9 102 77.5
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.0e-35 152.5 102 75.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.0e-35 152.5 124 64.5
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.6e-35 152.1 122 68.9
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.6e-35 152.1 105 75.2
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 5.9e-35 151.0 112 70.5
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 5.9e-35 151.0 112 70.5
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 5.9e-35 151.0 112 70.5
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 5.9e-35 151.0 111 70.3
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.7e-35 150.6 110 68.2
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 7.7e-35 150.6 110 72.7
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.7e-35 150.6 116 71.6
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-34 149.8 110 71.8
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.7e-34 149.4 128 64.8
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-34 149.1 124 66.1
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.2e-34 149.1 110 72.7
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.9e-34 148.7 109 68.8
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.8e-34 148.3 127 65.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.8e-34 148.3 127 65.4
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.8e-34 148.3 109 68.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.8e-34 148.3 111 71.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 6.5e-34 147.5 87 83.9
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.5e-34 147.5 118 66.9
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 8.5e-34 147.1 110 69.1
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-33 146.7 124 65.3
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.1e-33 146.7 129 61.2
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.4e-33 146.4 112 68.8
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.4e-33 146.4 127 66.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.9e-33 146.0 110 70.9
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.9e-33 146.0 87 80.5
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.5e-33 145.6 87 81.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.5e-33 145.6 118 66.1
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.5e-33 145.6 116 69.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.5e-33 145.6 106 70.8
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 3.2e-33 145.2 117 65.0
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 4.2e-33 144.8 120 61.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 4.2e-33 144.8 116 68.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 5.5e-33 144.4 110 69.1
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 5.5e-33 144.4 120 60.8
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 7.2e-33 144.1 87 80.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.1e-32 142.5 96 75.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.6e-32 141.7 122 65.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 3.6e-32 141.7 87 79.3
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.0e-31 140.2 117 66.7
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.8e-31 139.4 92 79.3
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.5e-30 136.3 122 63.9
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 4.4e-30 134.8 75 88.0
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.4e-30 134.0 75 84.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 9.7e-30 133.7 124 62.1
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.7e-29 131.7 77 83.1
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 5.3e-28 127.9 90 70.0
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.5e-25 119.0 76 81.6
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.2e-25 118.6 68 83.8
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.4e-23 113.2 78 73.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.2e-21 105.9 121 57.9
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 9.1e-20 100.5 56 83.9
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.5e-19 98.2 76 63.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.0e-18 97.1 78 66.7
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.8e-18 95.1 77 64.9
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.9e-17 92.8 80 58.8
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.5e-17 92.4 75 64.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.6e-16 88.6 46 95.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.7e-16 88.2 75 57.3
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.0e-15 87.0 83 61.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-15 86.7 88 56.8
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.6e-14 82.4 69 63.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 9.8e-14 80.5 73 58.9
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-10 70.1 67 56.7


User provided reference genes

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