Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 2.9e-85 318.5 163 100.0
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 2.9e-85 318.5 163 100.0
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 4.2e-84 314.7 163 98.8
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.3e-82 309.7 163 95.1
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 9.6e-81 303.5 161 95.0
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 2.8e-80 302.0 161 93.2
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 1.0e-77 293.5 161 91.3
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 2.0e-70 269.2 156 83.3
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 7.7e-70 267.3 159 82.4
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.0e-69 266.9 157 82.2
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.2e-69 265.8 156 84.0
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.1e-68 263.5 161 78.3
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.1e-68 263.5 155 83.2
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.9e-68 262.7 156 80.8
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 4.2e-68 261.5 159 80.5
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 7.2e-68 260.8 155 81.3
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.2e-67 260.0 155 78.7
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 1.2e-67 260.0 157 81.5
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 1.2e-67 260.0 154 82.5
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 1.6e-67 259.6 157 81.5
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 2.7e-67 258.8 157 81.5
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 2.7e-67 258.8 156 78.8
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 3.6e-67 258.5 158 78.5
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 6.1e-67 257.7 157 79.0
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.0e-66 256.9 157 79.0
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.0e-66 256.9 157 79.0
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.4e-66 256.5 161 78.9
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.3e-66 255.8 155 79.4
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 3.9e-66 255.0 155 81.3
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.9e-66 255.0 157 80.3
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 5.1e-66 254.6 156 80.1
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 5.1e-66 254.6 157 79.0
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 6.7e-66 254.2 157 78.3
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 6.7e-66 254.2 157 77.1
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 6.7e-66 254.2 156 77.6
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 8.8e-66 253.8 157 79.6
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.1e-65 253.4 159 75.5
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.1e-65 253.4 153 80.4
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.0e-65 252.7 157 77.7
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.0e-65 252.7 157 77.7
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 2.5e-65 252.3 160 78.8
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 9.7e-65 250.4 156 78.8
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 9.7e-65 250.4 155 76.8
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.3e-64 250.0 157 76.4
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.7e-64 249.6 156 78.2
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 2.8e-64 248.8 156 76.9
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 4.8e-64 248.1 154 78.6
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 6.3e-64 247.7 159 75.5
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 8.2e-64 247.3 148 80.4
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.4e-63 246.5 158 75.9
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.8e-63 246.1 155 76.8
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.4e-63 245.7 156 76.3
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 3.1e-63 245.4 155 74.8
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 3.1e-63 245.4 162 74.1
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 6.9e-63 244.2 157 79.0
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 6.9e-63 244.2 156 76.9
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 1.2e-62 243.4 150 77.3
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 1.2e-62 243.4 160 74.4
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.2e-62 243.4 155 78.1
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.6e-62 242.3 158 75.3
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 4.5e-62 241.5 151 76.8
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 5.9e-62 241.1 160 72.5
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 7.7e-62 240.7 158 75.3
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.0e-61 240.4 158 75.3
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 1.0e-61 240.4 156 73.1
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 2.2e-61 239.2 148 78.4
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 3.8e-61 238.4 148 77.0
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 3.8e-61 238.4 148 78.4
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 6.5e-61 237.7 155 74.8
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 6.5e-61 237.7 158 74.1
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 6.5e-61 237.7 158 74.7
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 6.5e-61 237.7 158 74.1
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 6.5e-61 237.7 154 73.4
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 8.5e-61 237.3 158 74.1
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-60 236.9 158 74.1
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 1.1e-60 236.9 155 74.8
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.4e-60 236.5 147 76.9
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.4e-60 236.5 158 74.1
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.4e-60 236.5 158 74.1
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.4e-60 236.5 158 74.1
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.5e-60 235.7 155 74.2
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 4.2e-60 235.0 152 74.3
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 4.2e-60 235.0 195 63.6
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 5.5e-60 234.6 147 76.9
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 9.4e-60 233.8 156 71.8
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 9.4e-60 233.8 160 70.0
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.3e-58 229.2 144 76.4
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 3.0e-58 228.8 146 77.4
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.7e-58 227.6 143 77.6
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 8.8e-58 227.3 178 65.2
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 1.5e-57 226.5 160 65.6
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.0e-57 226.1 179 65.9
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 1.7e-56 223.0 159 67.9
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.7e-56 223.0 158 70.9
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 4.1e-55 218.4 158 69.0
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 3.6e-51 205.3 158 60.8
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 3.7e-48 195.3 149 61.7
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 3.7e-48 195.3 167 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.2e-45 186.0 157 57.3
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.4e-42 176.8 90 91.1
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 5.2e-42 174.9 90 90.0
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 8.8e-42 174.1 118 72.0
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 8.3e-40 167.5 112 73.2
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.4e-39 166.0 147 57.8
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 9.1e-39 164.1 110 73.6
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 2.0e-38 162.9 156 55.1
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 3.5e-38 162.2 159 51.6
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 6.5e-37 157.9 162 54.3
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 3.6e-35 152.1 259 39.8
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 3.6e-35 152.1 154 48.7
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 7.7e-30 134.4 140 47.1
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.0e-26 124.0 77 81.8
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 2.0e-25 119.8 84 70.2
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.6e-17 92.8 63 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.2e-16 89.7 92 48.9
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 3.7e-16 89.0 64 67.2
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.6e-14 83.6 62 62.9
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 3.9e-13 79.0 55 70.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 2.5e-12 76.3 45 77.8
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 1.6e-11 73.6 139 34.5
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 2.0e-09 66.6 37 83.8
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 9.8e-09 64.3 37 81.1
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.4e-07 59.7 64 54.7


User provided reference genes

Program Settings