Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 0.0e+00 1767.3 959 100.0
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 0.0e+00 1726.1 955 98.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 0.0e+00 1706.0 959 96.5
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 0.0e+00 1405.2 1045 74.8
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 0.0e+00 1390.9 1072 74.3
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 0.0e+00 1376.7 1012 78.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 0.0e+00 1297.7 963 75.2
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.6e-300 1036.2 1045 56.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.7e-289 999.6 990 57.0
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 1.2e-287 993.4 1039 56.0
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.1e-285 986.9 1037 54.9
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 4.1e-280 968.4 989 55.9
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 9.4e-277 957.2 1001 54.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 8.0e-276 954.1 1037 53.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 3.7e-273 945.3 987 55.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.4e-272 942.6 957 55.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 3.3e-269 932.2 1047 53.2
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 3.0e-267 925.6 1074 50.7
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 1.7e-265 919.8 999 53.0
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.1e-264 917.1 970 54.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.4e-264 916.8 957 55.5
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.4e-264 916.8 1040 52.9
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 7.0e-264 914.4 994 53.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 5.9e-263 911.4 988 53.4
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.9e-263 911.4 1021 52.9
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.0e-262 910.6 1024 51.3
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.3e-262 909.4 1042 53.0
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.5e-261 906.7 1005 52.2
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.2e-260 903.7 1027 51.7
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.1e-260 902.9 1016 52.4
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 8.0e-260 901.0 998 52.6
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 8.0e-260 901.0 988 54.0
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 3.1e-259 899.0 983 52.5
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 3.1e-259 899.0 914 55.5
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.1e-259 899.0 939 54.8
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.4e-258 895.6 1199 46.0
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.7e-255 885.9 1032 51.9
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 7.8e-255 884.4 1004 52.4
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-253 880.6 966 52.2
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.9e-253 879.8 1005 51.9
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 5.6e-253 878.2 1093 47.8
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 9.5e-253 877.5 954 53.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 9.5e-253 877.5 1051 50.4
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.8e-252 875.9 996 52.1
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 3.6e-252 875.5 981 53.1
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.1e-251 872.5 1023 50.9
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.1e-251 872.5 985 52.8
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.8e-251 871.3 930 54.0
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 6.8e-251 871.3 953 53.4
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 1.2e-250 870.5 1155 47.2
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 9.8e-250 867.5 999 51.0
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 4.9e-249 865.1 1039 50.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.9e-248 863.2 931 53.6
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.6e-247 860.1 950 51.9
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.5e-247 859.0 1018 50.8
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.0e-246 857.4 992 50.5
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.7e-246 856.7 1030 49.7
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 2.3e-246 856.3 1002 51.9
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 3.9e-246 855.5 1030 49.4
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.6e-246 854.7 1002 50.2
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 8.6e-246 854.4 1033 49.3
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.5e-245 853.6 746 59.9
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.8e-244 849.4 974 51.1
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 8.9e-243 844.3 985 51.2
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.6e-242 842.8 979 50.4
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 3.4e-242 842.4 1016 51.2
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 3.7e-241 839.0 985 49.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 4.9e-241 838.6 898 54.0
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.1e-239 833.2 1039 48.2
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 6.0e-239 831.6 1015 50.3
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.8e-235 820.1 1039 48.2
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 4.0e-235 818.9 986 49.2
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 5.2e-235 818.5 972 50.1
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.5e-234 817.0 1051 48.3
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 2.0e-234 816.6 985 48.9
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 4.4e-234 815.5 989 47.8
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.1e-231 806.6 744 57.9
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 6.0e-231 805.1 961 48.2
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 6.0e-231 805.1 987 48.8
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.0e-230 804.3 993 48.7
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.3e-230 803.1 960 48.1
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 5.1e-230 802.0 1069 46.7
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.1e-229 800.8 979 49.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.6e-228 795.8 988 49.3
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 4.8e-228 795.4 1035 48.5
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 6.2e-228 795.0 982 48.0
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 6.2e-228 795.0 986 47.8
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 6.2e-228 795.0 997 47.5
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 9.9e-226 787.7 968 48.1
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.2e-225 786.6 990 47.9
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.9e-224 783.5 1047 46.4
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.6e-223 780.4 959 47.2
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 4.6e-223 778.9 1010 48.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 6.0e-223 778.5 959 46.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 6.6e-222 775.0 965 47.2
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 5.3e-219 765.4 1003 48.2
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.0e-218 763.5 978 46.6
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.9e-216 756.9 760 53.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 3.2e-216 756.1 746 54.6
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 9.3e-216 754.6 997 45.5
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.1e-215 753.4 705 57.2
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.1e-213 747.7 723 55.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.5e-213 747.3 739 54.3
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 6.2e-212 741.9 738 53.7
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 2.4e-211 740.0 762 52.5
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 6.9e-211 738.4 774 53.1
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.5e-210 737.3 975 48.2
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.7e-209 733.8 984 47.3
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.9e-209 733.0 946 46.6
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.8e-203 713.8 852 48.5
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.8e-198 697.2 754 51.2
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 9.4e-192 674.9 719 51.2
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 2.7e-191 673.3 723 50.8
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.1e-173 614.8 860 44.7
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.1e-171 606.7 1058 39.5
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.0e-161 575.1 749 43.7
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 9.8e-157 558.5 882 42.2
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 3.7e-148 530.0 737 42.2
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.2e-143 515.0 750 45.6
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 9.6e-120 435.6 747 38.2
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 4.2e-107 393.7 585 37.8
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 7.4e-104 382.9 306 58.5
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.4e-102 377.9 922 30.3
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 9.6e-96 355.9 1002 29.5
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 6.0e-90 336.7 461 39.0
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 7.2e-43 180.3 114 72.8
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.4e-41 176.0 114 73.7
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 3.5e-29 134.8 391 26.9
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.6e-29 134.4 146 52.7
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 5.6e-27 127.5 186 44.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.6e-26 125.9 335 38.5
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.0e-13 80.9 78 59.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 3.9e-12 78.2 106 41.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.5e-11 76.3 106 41.5
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.3e-11 75.1 183 32.8
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 4.3e-11 74.7 183 32.8
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.5e-08 66.2 79 46.8


User provided reference genes

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