Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 3.3e-127 458.4 230 100.0
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 5.3e-109 397.9 233 88.4
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 8.1e-25 118.2 230 38.7
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.2e-21 105.9 236 36.4
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 3.5e-20 102.8 234 33.8
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 6.0e-20 102.1 234 34.2
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 5.1e-19 99.0 236 35.2
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 2.5e-18 96.7 257 32.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 3.3e-18 96.3 236 33.5
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 3.3e-18 96.3 232 34.9
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 7.3e-18 95.1 232 33.6
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 1.3e-17 94.4 229 32.3
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 2.8e-17 93.2 230 35.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 4.8e-17 92.4 232 34.9
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 8.1e-17 91.7 233 34.8
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 1.1e-16 91.3 254 31.1
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 1.1e-16 91.3 232 35.3
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.4e-16 90.9 230 34.8
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.4e-16 90.9 234 32.5
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 3.1e-16 89.7 233 35.2
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 9.0e-16 88.2 237 31.6
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 1.5e-15 87.4 240 32.5
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 2.0e-15 87.0 246 32.1
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 2.6e-15 86.7 232 33.6
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 5.8e-15 85.5 247 31.6
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 7.6e-15 85.1 241 32.0
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 9.9e-15 84.7 222 31.1
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 9.9e-15 84.7 234 29.9
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 9.9e-15 84.7 262 31.3
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 3.8e-14 82.8 236 31.8
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 3.8e-14 82.8 222 30.6
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 3.8e-14 82.8 239 31.8
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 6.4e-14 82.0 230 33.0
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 6.4e-14 82.0 229 32.8
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 8.4e-14 81.6 232 33.6
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 8.4e-14 81.6 236 30.9
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 1.1e-13 81.3 231 31.6
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 1.9e-13 80.5 233 30.0
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 1.9e-13 80.5 237 32.1
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 3.2e-13 79.7 234 28.6
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 3.2e-13 79.7 233 33.9
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 4.2e-13 79.3 236 33.1
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 4.2e-13 79.3 240 32.1
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 4.2e-13 79.3 238 31.9
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.4e-13 79.0 239 32.2
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 7.1e-13 78.6 241 31.1
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.2e-12 77.8 237 32.1
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 2.7e-12 76.6 237 30.0
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 6.0e-12 75.5 220 28.6
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 7.9e-12 75.1 232 29.3
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.0e-11 74.7 226 31.9
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.0e-11 74.7 228 28.9
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.0e-11 74.7 233 34.8
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 1.3e-11 74.3 232 28.9
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 1.3e-11 74.3 240 30.4
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 1.3e-11 74.3 237 30.8
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 3.0e-11 73.2 231 28.6
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.1e-10 71.2 238 29.4
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 1.9e-10 70.5 216 28.7
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 3.3e-10 69.7 181 30.4
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 7.4e-10 68.6 248 31.9
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 1.3e-09 67.8 100 42.0
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 1.6e-09 67.4 244 32.0
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 4.8e-09 65.9 244 29.5
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 4.8e-09 65.9 220 31.8
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 1.1e-08 64.7 229 27.5
CAN.G896.7 Capsicum annuum HOM05D008367 ORTHO05D010529 1.4e-08 64.3 223 31.8
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 2.4e-08 63.5 222 29.7
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 3.1e-08 63.2 211 30.8
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 4.0e-08 62.8 222 29.7
Medtr7g096950 Medicago truncatula HOM05D008367 ORTHO05D010529 9.0e-08 61.6 223 30.0
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 9.0e-08 61.6 225 27.1
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 1.2e-07 61.2 220 29.1
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 2.0e-07 60.5 55 54.5
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 2.6e-07 60.1 236 28.8
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 2.6e-07 60.1 54 55.6
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 3.4e-07 59.7 227 26.0
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 5.8e-07 58.9 78 43.6
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 5.8e-07 58.9 209 26.8
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 7.6e-07 58.5 233 27.0
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 7.6e-07 58.5 39 74.4
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.0e-06 58.2 229 26.2
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 1.3e-06 57.8 236 28.0
Gohir.D07G155080 Gossypium hirsutum HOM05D008367 ORTHO05D010529 1.3e-06 57.8 219 30.1
Gorai.001G177400 Gossypium raimondii HOM05D008367 ORTHO05D010529 1.3e-06 57.8 219 30.1
Rhsim13G0035000 Rhododendron simsii HOM05D008367 ORTHO05D010529 2.2e-06 57.0 234 28.6
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.2e-06 57.0 223 27.8
Gohir.A07G148700 Gossypium hirsutum HOM05D008367 ORTHO05D010529 2.9e-06 56.6 218 28.4
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 3.8e-06 56.2 50 54.0
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 3.8e-06 56.2 240 26.2
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 4.9e-06 55.8 208 28.8
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 6.4e-06 55.5 93 38.7
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 8.4e-06 55.1 228 25.9
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 8.4e-06 55.1 228 26.3
Thecc.01G258200 Theobroma cacao HOM05D008367 ORTHO05D010529 8.4e-06 55.1 221 31.7


User provided reference genes

Program Settings