Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 3.8e-55 218.0 117 100.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.1e-53 212.2 117 98.3
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.8e-52 209.1 118 96.6
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.1e-41 171.8 128 75.0
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 9.1e-41 170.2 123 75.6
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.9e-40 167.5 123 74.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.6e-35 152.1 111 66.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.4e-35 151.4 111 65.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 4.4e-35 151.4 111 65.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.8e-34 148.7 121 71.9
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 4.9e-34 147.9 123 71.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.2e-27 126.7 109 61.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 7.5e-27 124.0 105 60.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 7.5e-27 124.0 108 62.0
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.4e-25 119.8 106 62.3
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.3e-23 113.2 113 59.3
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.3e-23 112.5 110 57.3
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 6.6e-23 110.9 115 54.8
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.5e-22 109.8 109 59.6
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.2e-21 106.7 108 53.7
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.7e-21 104.8 114 52.6
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.1e-20 103.6 114 54.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 8.9e-20 100.5 108 50.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 8.9e-20 100.5 116 52.6
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-19 100.1 114 51.8
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.5e-19 99.8 104 49.0
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.5e-19 99.8 104 50.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.6e-19 99.0 100 53.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 7.5e-19 97.4 108 50.9
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.2e-18 95.9 98 58.2
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 4.9e-18 94.7 97 54.6
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.9e-18 94.7 99 59.6
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 6.4e-18 94.4 96 58.3
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.4e-18 94.4 99 59.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 6.4e-18 94.4 107 51.4
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 6.4e-18 94.4 100 53.0
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.1e-17 93.6 116 45.7
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.1e-17 93.6 96 61.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-17 93.2 99 58.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.9e-17 92.8 99 51.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.9e-17 92.8 109 56.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.9e-17 92.8 112 46.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.2e-17 92.0 102 52.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.1e-17 91.7 97 53.6
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.4e-17 91.3 113 48.7
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.2e-16 90.1 120 48.3
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.2e-16 90.1 120 48.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-16 90.1 106 48.1
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.6e-16 89.7 102 50.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.6e-16 89.7 97 53.6
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.1e-16 89.4 95 50.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.1e-16 89.4 98 48.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.7e-16 89.0 98 46.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-16 89.0 107 48.6
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 3.5e-16 88.6 98 46.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 4.6e-16 88.2 113 45.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 4.6e-16 88.2 110 48.2
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 6.0e-16 87.8 104 48.1
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 6.0e-16 87.8 103 48.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.8e-16 87.4 109 48.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 7.8e-16 87.4 94 48.9
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 7.8e-16 87.4 105 41.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.0e-15 87.0 98 46.9
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-15 86.7 95 48.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.7e-15 86.3 110 48.2
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.7e-15 86.3 99 49.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.3e-15 85.9 98 49.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-15 85.9 106 46.2
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-15 85.9 110 48.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.0e-15 85.5 95 47.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 3.0e-15 85.5 106 43.4
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.1e-15 84.7 98 50.0
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 5.1e-15 84.7 102 55.9
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.6e-15 84.3 107 43.9
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.6e-15 84.3 96 47.9
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.6e-15 84.3 96 47.9
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.6e-15 84.3 100 50.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 8.6e-15 84.0 98 45.9
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 8.6e-15 84.0 105 41.9
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.5e-14 83.2 102 50.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.9e-14 82.8 91 48.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.9e-14 82.8 104 48.1
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.5e-14 82.4 101 56.4
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.3e-14 82.0 98 52.0
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 4.3e-14 81.6 98 48.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 4.3e-14 81.6 89 49.4
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.6e-14 81.3 96 51.0
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 7.3e-14 80.9 109 45.9
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 7.3e-14 80.9 98 49.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.2e-13 80.1 90 66.7
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-13 80.1 99 43.4
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-13 79.7 95 45.3
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.1e-13 79.3 84 53.6
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.1e-13 79.3 105 46.7
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.1e-13 79.3 95 49.5
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-13 78.6 96 46.9
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-13 78.6 95 49.5
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 6.2e-13 77.8 121 52.1
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 6.2e-13 77.8 91 50.5
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-12 77.0 101 54.5
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.8e-12 76.3 100 45.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.1e-12 75.5 115 47.0
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.1e-12 75.5 115 47.0
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.1e-12 75.5 112 48.2
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 3.1e-12 75.5 117 39.3
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 4.0e-12 75.1 106 48.1
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.0e-12 75.1 98 46.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 4.0e-12 75.1 110 44.5
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.2e-12 74.7 97 46.4
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.8e-12 74.3 95 46.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 6.8e-12 74.3 91 50.5
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.9e-12 73.9 103 42.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.9e-12 73.9 106 42.5
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-11 73.6 108 41.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.2e-11 73.6 101 50.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.5e-11 73.2 97 44.3
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.5e-11 73.2 94 54.3
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.6e-11 72.4 108 41.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 2.6e-11 72.4 103 43.7
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.6e-11 72.4 94 43.6
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.6e-11 72.4 106 44.3
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.6e-11 72.4 99 43.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.6e-11 72.4 98 42.9
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.4e-11 72.0 108 41.7
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 3.4e-11 72.0 97 46.4
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.4e-11 72.0 98 45.9
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 5.8e-11 71.2 97 45.4
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 7.5e-11 70.9 89 47.2
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 9.9e-11 70.5 108 41.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 9.9e-11 70.5 108 41.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 9.9e-11 70.5 108 41.7
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.3e-10 70.1 98 44.9
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.7e-10 69.7 94 44.7
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.2e-10 69.3 105 41.9
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.2e-10 69.3 107 43.9
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-10 68.9 103 43.7
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.9e-10 68.9 96 45.8
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.9e-10 68.2 100 43.0
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.4e-10 67.8 96 45.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.3e-10 67.4 103 42.7
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.4e-09 66.6 110 41.8
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.4e-09 66.6 89 42.7
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.4e-09 66.6 94 42.6
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.9e-09 66.2 97 42.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.9e-09 66.2 101 42.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.9e-09 66.2 109 44.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.4e-09 65.9 97 42.3
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.4e-09 65.9 97 42.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.2e-09 65.5 110 40.9
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 3.2e-09 65.5 97 42.3
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.2e-09 65.5 103 44.7
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.2e-09 65.5 44 75.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.1e-09 65.1 102 42.2
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 5.4e-09 64.7 97 42.3
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.4e-09 64.7 97 42.3
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.1e-09 64.3 95 42.1
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 7.1e-09 64.3 109 38.5
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 9.2e-09 63.9 104 39.4
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 95 40.0
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-08 63.5 102 42.2
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.6e-08 63.2 91 42.9
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.7e-08 62.4 95 41.1
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.7e-08 62.4 95 41.1
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 4.6e-08 61.6 102 45.1
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 4.6e-08 61.6 83 45.8
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 6.0e-08 61.2 103 38.8
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 6.0e-08 61.2 103 38.8
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 7.8e-08 60.8 97 40.2
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.7e-07 59.7 88 40.9
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 3.9e-07 58.5 108 34.3
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.6e-07 57.8 103 38.8
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-06 57.0 104 39.4
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.5e-06 55.8 106 36.8
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.5e-06 55.8 111 36.0


User provided reference genes

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