Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g032040 Solanum pennellii HOM05D007102 ORTHO05D008950 4.3e-144 514.6 253 100.0
Solyc09g083150.4 Solanum lycopersicum HOM05D007102 ORTHO05D008950 2.3e-134 482.3 254 94.1
CAN.G749.40 Capsicum annuum HOM05D007102 ORTHO05D008950 7.1e-123 444.1 249 90.0
Nitab4.5_0001856g0010 Nicotiana tabacum HOM05D007102 ORTHO05D008950 8.1e-119 430.6 254 85.0
Peaxi162Scf00788g00047 Petunia axillaris HOM05D007102 ORTHO05D008950 2.6e-117 425.6 260 84.6
PGSC0003DMG400006084 Solanum tuberosum HOM05D007102 ORTHO05D008950 2.2e-116 422.5 209 96.7
Nitab4.5_0007585g0040 Nicotiana tabacum HOM05D007102 ORTHO05D008950 4.6e-106 388.3 236 83.1
CANSAT54G0300 Cannabis sativa HOM05D007102 ORTHO05D008950 3.3e-88 328.9 187 79.7
Cc01_g08950 Coffea canephora HOM05D007102 ORTHO05D008950 9.7e-88 327.4 214 75.2
HanXRQChr16g0508431 Helianthus annuus HOM05D007102 ORTHO05D008950 2.8e-87 325.9 167 88.0
MSTRG.21273 Avicennia marina HOM05D007102 ORTHO05D008950 6.3e-87 324.7 212 74.5
Migut.D00799 Erythranthe guttata HOM05D007102 ORTHO05D008950 1.4e-86 323.6 167 86.2
Lalb_Chr20g0117241 Lupinus albus HOM05D007102 ORTHO05D008950 2.4e-86 322.8 191 80.1
PSO266G0014 Papaver somniferum HOM05D007102 ORTHO05D008950 3.1e-86 322.4 200 78.0
Lsat_1_v5_gn_8_99200 Lactuca sativa HOM05D007102 ORTHO05D008950 5.3e-86 321.6 170 85.3
CDE07G1209 Ceratophyllum demersum HOM05D007102 ORTHO05D008950 2.6e-85 319.3 170 84.7
PSO384G1696 Papaver somniferum HOM05D007102 ORTHO05D008950 2.6e-85 319.3 183 82.0
CSS0027114 Camellia sinensis var. sinensis HOM05D007102 ORTHO05D008950 3.4e-85 318.9 167 86.2
Dinv12295 Davidia involucrata HOM05D007102 ORTHO05D008950 3.4e-85 318.9 188 79.8
Hma1.2p1_0170F.1_g075400 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 3.4e-85 318.9 193 77.7
Nn2g10214 Nelumbo nucifera HOM05D007102 ORTHO05D008950 3.4e-85 318.9 172 84.3
Manes.18G123900 Manihot esculenta HOM05D007102 ORTHO05D008950 5.9e-85 318.2 171 84.2
QL01p023619 Quercus lobata HOM05D007102 ORTHO05D008950 7.7e-85 317.8 183 79.8
Glyma.11G201200 Glycine max HOM05D007102 ORTHO05D008950 1.0e-84 317.4 213 73.2
CiPaw.13G061600 Carya illinoinensis HOM05D007102 ORTHO05D008950 1.3e-84 317.0 182 80.2
Ciclev10002429m.g Citrus clementina HOM05D007102 ORTHO05D008950 1.3e-84 317.0 208 72.1
Eucgr.J01847 Eucalyptus grandis HOM05D007102 ORTHO05D008950 1.7e-84 316.6 196 77.0
Lj2C1106T0 Lonicera japonica HOM05D007102 ORTHO05D008950 1.7e-84 316.6 212 71.7
Cfa011824 Carpinus fangiana HOM05D007102 ORTHO05D008950 2.9e-84 315.8 172 84.3
Haze_24461 Corylus avellana HOM05D007102 ORTHO05D008950 2.9e-84 315.8 167 86.8
unitig_0.g217 Utricularia gibba HOM05D007102 ORTHO05D008950 2.9e-84 315.8 208 74.0
TAR624G0943 Trochodendron aralioides HOM05D007102 ORTHO05D008950 3.8e-84 315.5 175 81.7
Lj6g0026798 Lotus japonicus HOM05D007102 ORTHO05D008950 5.0e-84 315.1 178 82.6
PGR042G3056 Punica granatum HOM05D007102 ORTHO05D008950 5.0e-84 315.1 167 84.4
TWI31G0907 Tripterygium wilfordii HOM05D007102 ORTHO05D008950 5.0e-84 315.1 199 75.4
Actinidia23827 Actinidia chinensis HOM05D007102 ORTHO05D008950 6.5e-84 314.7 168 86.3
Aqoxy5G01440 Aquilegia oxysepala HOM05D007102 ORTHO05D008950 6.5e-84 314.7 170 84.7
DCAR_021104 Daucus carota HOM05D007102 ORTHO05D008950 6.5e-84 314.7 207 72.0
ECA236G5009 Erigeron canadensis HOM05D007102 ORTHO05D008950 6.5e-84 314.7 197 74.6
MELO3C019595.2 Cucumis melo HOM05D007102 ORTHO05D008950 8.5e-84 314.3 167 86.8
CsaV3_6G013250 Cucumis sativus L. HOM05D007102 ORTHO05D008950 8.5e-84 314.3 167 86.8
Ca_15087_v3 Cicer arietinum L. HOM05D007102 ORTHO05D008950 1.1e-83 313.9 203 72.9
Thecc.09G366000 Theobroma cacao HOM05D007102 ORTHO05D008950 1.4e-83 313.5 167 86.2
Glyma.18G049600 Glycine max HOM05D007102 ORTHO05D008950 1.9e-83 313.2 171 85.4
FAN21G1718 Fragaria x ananassa HOM05D007102 ORTHO05D008950 2.5e-83 312.8 170 84.1
Duzib168G2173 Durio zibethinus HOM05D007102 ORTHO05D008950 4.2e-83 312.0 203 74.9
MD03G1047200 Malus domestica HOM05D007102 ORTHO05D008950 4.2e-83 312.0 169 82.8
MD11G1049700 Malus domestica HOM05D007102 ORTHO05D008950 4.2e-83 312.0 169 82.8
Medtr3g062890 Medicago truncatula HOM05D007102 ORTHO05D008950 4.2e-83 312.0 190 77.4
FvH4_3g41140 Fragaria vesca HOM05D007102 ORTHO05D008950 5.5e-83 311.6 205 73.2
FAN16G1418 Fragaria x ananassa HOM05D007102 ORTHO05D008950 5.5e-83 311.6 205 73.2
RcHm_v2.0_Chr5g0073911 Rosa chinensis HOM05D007102 ORTHO05D008950 5.5e-83 311.6 206 72.3
GSVIVG01024526001 Vitis vinifera HOM05D007102 ORTHO05D008950 7.2e-83 311.2 180 81.7
Psat5g145240 Pisum sativum HOM05D007102 ORTHO05D008950 2.1e-82 309.7 174 81.6
Ah.05g170720 Amaranthus hybridus HOM05D007102 ORTHO05D008950 3.6e-82 308.9 171 82.5
Prupe.6G038400 Prunus persica HOM05D007102 ORTHO05D008950 3.6e-82 308.9 170 82.4
FAN25G2933 Fragaria x ananassa HOM05D007102 ORTHO05D008950 4.6e-82 308.5 157 88.5
THA.LOC104819153 Tarenaya hassleriana HOM05D007102 ORTHO05D008950 6.1e-82 308.1 213 69.0
vmacro14656 Vaccinium macrocarpon HOM05D007102 ORTHO05D008950 1.0e-81 307.4 162 84.6
TPR.G13817 Trifolium pratense HOM05D007102 ORTHO05D008950 1.4e-81 307.0 190 76.8
Gohir.D13G017200 Gossypium hirsutum HOM05D007102 ORTHO05D008950 1.8e-81 306.6 160 85.6
Potri.013G160600 Populus trichocarpa HOM05D007102 ORTHO05D008950 3.0e-81 305.8 165 85.5
AUR62019027 Chenopodium quinoa HOM05D007102 ORTHO05D008950 3.9e-81 305.4 218 70.2
CARHR272050 Cardamine hirsuta HOM05D007102 ORTHO05D008950 5.1e-81 305.1 170 80.6
AL8G34360 Arabidopsis lyrata HOM05D007102 ORTHO05D008950 8.8e-81 304.3 170 80.0
EL10Ac1g01074 Beta vulgaris HOM05D007102 ORTHO05D008950 8.8e-81 304.3 215 67.4
Gorai.013G019100 Gossypium raimondii HOM05D007102 ORTHO05D008950 1.5e-80 303.5 160 85.0
VMungo0540G2371 Vigna mungo HOM05D007102 ORTHO05D008950 1.5e-80 303.5 212 69.8
AUR62027864 Chenopodium quinoa HOM05D007102 ORTHO05D008950 3.3e-80 302.4 219 67.6
Rhsim01G0245100 Rhododendron simsii HOM05D007102 ORTHO05D008950 3.3e-80 302.4 198 71.7
Sabra13G0128500 Salix brachista HOM05D007102 ORTHO05D008950 4.4e-80 302.0 239 64.9
AT5G58260 Arabidopsis thaliana HOM05D007102 ORTHO05D008950 1.3e-79 300.4 170 78.2
A03p12340 Brassica napus HOM05D007102 ORTHO05D008950 1.3e-79 300.4 173 78.6
BraA03t10546Z Brassica rapa HOM05D007102 ORTHO05D008950 1.3e-79 300.4 173 78.6
Phvul.006G081700 Phaseolus vulgaris HOM05D007102 ORTHO05D008950 1.3e-79 300.4 223 66.8
C03p14490 Brassica napus HOM05D007102 ORTHO05D008950 2.8e-79 299.3 173 78.0
BcaB01g04483 Brassica carinata HOM05D007102 ORTHO05D008950 3.7e-79 298.9 185 74.6
Sp6g19920 Schrenkiella parvula HOM05D007102 ORTHO05D008950 3.7e-79 298.9 184 75.0
BcaB01g04537 Brassica carinata HOM05D007102 ORTHO05D008950 8.2e-79 297.7 173 78.0
BcaB01g04546 Brassica carinata HOM05D007102 ORTHO05D008950 8.2e-79 297.7 173 78.0
BolC3t13892H Brassica oleracea HOM05D007102 ORTHO05D008950 8.2e-79 297.7 173 78.0
Zm00001eb145680 Zea mays HOM05D007102 ORTHO05D008950 8.2e-79 297.7 169 78.1
Carub.0008s1880 Capsella rubella HOM05D007102 ORTHO05D008950 2.4e-78 296.2 246 60.6
Os01g0882500 Oryza sativa ssp. japonica HOM05D007102 ORTHO05D008950 4.1e-78 295.4 157 82.2
arahy.Tifrunner.gnm1.ann1.6T6LBL Arachis hypogaea HOM05D007102 ORTHO05D008950 2.0e-77 293.1 162 85.2
Oeu005352.1 Olea europaea HOM05D007102 ORTHO05D008950 5.9e-77 291.6 175 79.4
MBI15_g05591_MAGBIO Magnolia biondii HOM05D007102 ORTHO05D008950 1.0e-76 290.8 200 70.5
ClCG02G018940 Citrullus lanatus HOM05D007102 ORTHO05D008950 2.5e-75 286.2 167 82.0
ATR1127G111 Amborella trichopoda HOM05D007102 ORTHO05D008950 3.6e-74 282.3 153 85.0
Sed0015928 Sechium edule HOM05D007102 ORTHO05D008950 6.1e-74 281.6 155 84.5
Cpa.g.sc2.262 Carica papaya HOM05D007102 ORTHO05D008950 1.4e-73 280.4 153 82.4
Atru.chr10.2354 Acer truncatum HOM05D007102 ORTHO05D008950 5.2e-73 278.5 184 75.0
Hund16865 Selenicereus undatus HOM05D007102 ORTHO05D008950 2.2e-68 263.1 160 76.9
Pp3c3_15360 Physcomitrium patens HOM05D007102 ORTHO05D008950 6.1e-66 255.0 157 72.6
Mapoly0073s0080 Marchantia polymorpha HOM05D007102 ORTHO05D008950 1.5e-64 250.4 165 72.1
Gohir.A13G016100 Gossypium hirsutum HOM05D007102 ORTHO05D008950 2.0e-61 240.0 130 82.3
Hma1.2p1_0170F.1_g075390 Hydrangea macrophylla HOM05D007102 ORTHO05D008950 2.2e-60 236.5 150 74.0
SMO119G0373 Selaginella moellendorffii HOM05D007102 ORTHO05D008950 8.8e-57 224.6 155 64.5
Aa31LG11G50 Aethionema arabicum HOM05D007102 ORTHO05D008950 2.0e-56 223.4 127 79.5
FAN11G2493 Fragaria x ananassa HOM05D007102 ORTHO05D008950 2.4e-54 216.5 205 56.1
Actinidia34510 Actinidia chinensis HOM05D007102 ORTHO05D008950 5.4e-54 215.3 107 92.5
COL.COLO4_11231 Corchorus olitorius HOM05D007102 ORTHO05D008950 1.3e-52 210.7 117 82.1
SEGI_29953 Sequoiadendron giganteum HOM05D007102 ORTHO05D008950 1.3e-47 194.1 121 72.7
Pp3c10_12660 Physcomitrium patens HOM05D007102 ORTHO05D008950 3.8e-44 182.6 130 65.4
arahy.Tifrunner.gnm1.ann1.S4JT24 Arachis hypogaea HOM05D007102 ORTHO05D008950 9.5e-43 177.9 162 58.6
CBR_g36846 Chara braunii HOM05D007102 ORTHO05D008950 4.4e-32 142.5 169 42.6
Thhalv10014691m.g Eutrema salsugineum HOM05D007102 ORTHO05D008950 2.4e-30 136.7 100 63.0
Haze_24494 Corylus avellana HOM05D007102 ORTHO05D008950 1.6e-26 124.0 170 44.1
CiPaw.13G061300 Carya illinoinensis HOM05D007102 ORTHO05D008950 2.2e-15 87.0 42 92.9
SEGI_39426 Sequoiadendron giganteum HOM05D007102 ORTHO05D008950 2.7e-13 80.1 42 83.3
A10p15960 Brassica napus HOM05D007102 ORTHO05D008950 4.4e-08 62.8 58 50.0


User provided reference genes

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