Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 2.6e-111 405.6 237 100.0
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 5.5e-109 397.9 237 97.0
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.7e-57 226.9 214 66.4
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 1.7e-54 216.9 155 71.6
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.2e-52 210.7 234 56.4
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 3.6e-36 156.0 153 60.1
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 7.1e-32 141.7 130 55.4
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 6.0e-31 138.7 129 52.7
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 5.6e-29 132.1 144 50.7
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 7.3e-29 131.7 145 49.7
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 7.3e-29 131.7 145 49.7
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 9.5e-29 131.3 123 52.0
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 6.2e-28 128.6 122 50.8
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 1.1e-27 127.9 104 54.8
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.8e-27 127.1 94 62.8
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 5.2e-27 125.6 134 50.0
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 6.8e-27 125.2 128 49.2
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.2e-26 124.4 153 43.1
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 1.2e-26 124.4 146 45.2
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 2.6e-26 123.2 153 41.8
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 4.4e-26 122.5 114 52.6
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 5.8e-26 122.1 132 45.5
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 7.6e-26 121.7 153 41.8
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 1.4e-24 117.5 100 53.0
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 4.1e-24 115.9 167 43.1
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 1.2e-23 114.4 102 54.9
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 1.2e-23 114.4 100 51.0
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 3.5e-23 112.8 149 43.0
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 1.3e-22 110.9 137 41.6
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 1.7e-22 110.5 117 45.3
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 2.3e-22 110.2 97 54.6
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 3.0e-22 109.8 125 44.8
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 8.6e-22 108.2 116 48.3
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 8.6e-22 108.2 131 42.0
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 1.1e-21 107.8 113 48.7
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 2.5e-21 106.7 179 37.4
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.5e-21 106.7 138 42.0
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.5e-21 106.7 132 45.5
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 2.5e-21 106.7 132 45.5
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 5.6e-21 105.5 131 46.6
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 5.6e-21 105.5 131 46.6
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 7.3e-21 105.1 182 36.8
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 7.3e-21 105.1 112 49.1
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 7.3e-21 105.1 112 49.1
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 9.6e-21 104.8 144 41.0
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 9.6e-21 104.8 136 39.0
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 9.6e-21 104.8 140 42.9
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 9.6e-21 104.8 112 46.4
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 1.6e-20 104.0 113 46.0
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 2.1e-20 103.6 139 41.0
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 2.8e-20 103.2 140 42.1
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 2.8e-20 103.2 116 49.1
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 3.6e-20 102.8 105 50.5
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 3.6e-20 102.8 139 41.0
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 3.6e-20 102.8 97 48.5
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 4.7e-20 102.4 135 43.7
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 4.7e-20 102.4 135 43.7
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 4.7e-20 102.4 136 42.6
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 6.2e-20 102.1 101 46.5
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 1.1e-19 101.3 139 40.3
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 1.4e-19 100.9 103 50.5
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 1.8e-19 100.5 139 40.3
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 2.4e-19 100.1 100 46.0
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 4.0e-19 99.4 125 44.8
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 8.9e-19 98.2 138 39.1
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 8.9e-19 98.2 138 39.1
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 8.9e-19 98.2 100 46.0
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 1.2e-18 97.8 135 43.7
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 1.2e-18 97.8 114 43.9
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 1.5e-18 97.4 140 40.0
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 1.5e-18 97.4 127 41.7
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 1.5e-18 97.4 127 40.9
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 2.0e-18 97.1 134 36.6
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 2.0e-18 97.1 97 48.5
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 2.6e-18 96.7 137 39.4
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 4.4e-18 95.9 105 43.8
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 1.7e-17 94.0 112 43.8
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 2.2e-17 93.6 105 43.8
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 3.8e-17 92.8 150 40.0
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 4.9e-17 92.4 105 42.9
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 1.1e-16 91.3 101 42.6
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 1.9e-16 90.5 112 42.9
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 4.2e-16 89.4 121 40.5
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 4.2e-16 89.4 97 46.4
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 5.4e-16 89.0 117 37.6
Peaxi162Scf00092g00337 Petunia axillaris HOM05D007411 ORTHO05D009025 9.3e-16 88.2 111 48.6
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 1.2e-15 87.8 134 39.6
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 1.2e-15 87.8 128 37.5
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 4.6e-15 85.9 98 44.9
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 7.8e-15 85.1 85 49.4
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 2.3e-14 83.6 87 46.0
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 3.0e-14 83.2 94 44.7
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 5.1e-14 82.4 154 35.7
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 1.4e-11 74.3 106 39.6
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 4.0e-11 72.8 89 41.6
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 5.3e-11 72.4 98 39.8
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 2.0e-10 70.5 83 37.3
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 5.4e-08 62.4 50 54.0
Zm00001eb408970 Zea mays HOM05D032292 ORTHO05D009025 1.3e-06 57.8 141 29.8
FvH4_3g16330 Fragaria vesca HOM05D018240 ORTHO05D025480 2.3e-06 57.0 54 46.3


User provided reference genes

Program Settings