Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g031170 Solanum pennellii HOM05D002080 ORTHO05D002062 2.1e-53 212.6 151 100.0
Solyc09g082290.3 Solanum lycopersicum HOM05D002080 ORTHO05D002062 1.6e-50 203.0 149 79.9
PGSC0003DMG400032260 Solanum tuberosum HOM05D002080 ORTHO05D002062 4.9e-47 191.4 151 92.7
CAN.G1094.23 Capsicum annuum HOM05D002080 ORTHO05D002062 2.3e-36 156.0 153 64.1
Nitab4.5_0007479g0010 Nicotiana tabacum HOM05D002080 ORTHO05D002062 4.2e-30 135.2 149 69.1
Nitab4.5_0001157g0060 Nicotiana tabacum HOM05D002080 ORTHO05D002062 1.8e-28 129.8 149 68.5
Peaxi162Scf00092g00338 Petunia axillaris HOM05D002080 ORTHO05D002062 3.7e-18 95.5 149 52.3
Peaxi162Scf00402g00513 Petunia axillaris HOM05D002080 ORTHO05D002062 1.2e-16 90.5 88 59.1
Atru.chr4.2434 Acer truncatum HOM05D002080 ORTHO05D002062 2.7e-13 79.3 75 52.0
Nitab4.5_0012606g0020 Nicotiana tabacum HOM05D002080 ORTHO05D002062 3.6e-13 79.0 79 55.7
PGSC0003DMG402013388 Solanum tuberosum HOM05D002080 ORTHO05D002062 6.7e-12 74.7 163 38.7
Nitab4.5_0007068g0010 Nicotiana tabacum HOM05D002080 ORTHO05D002062 8.8e-12 74.3 149 38.9
MSTRG.9969 Avicennia marina HOM05D002080 ORTHO05D002062 2.0e-11 73.2 72 52.8
CiPaw.01G198500 Carya illinoinensis HOM05D002080 ORTHO05D002062 2.0e-11 73.2 106 44.3
CiPaw.02G123000 Carya illinoinensis HOM05D002080 ORTHO05D002062 2.0e-11 73.2 99 43.4
Manes.15G030600 Manihot esculenta HOM05D002080 ORTHO05D002062 2.6e-11 72.8 89 44.9
Thecc.04G234900 Theobroma cacao HOM05D002080 ORTHO05D002062 3.3e-11 72.4 90 47.8
AUR62034721 Chenopodium quinoa HOM05D002080 ORTHO05D002062 4.4e-11 72.0 71 52.1
Duzib151G0502 Durio zibethinus HOM05D002080 ORTHO05D002062 4.4e-11 72.0 90 45.6
HanXRQChr09g0247381 Helianthus annuus HOM05D002080 ORTHO05D002062 5.7e-11 71.6 90 43.3
Potri.010G085200 Populus trichocarpa HOM05D002080 ORTHO05D002062 7.5e-11 71.2 90 46.7
CAN.G638.93 Capsicum annuum HOM05D002080 ORTHO05D002062 9.7e-11 70.9 107 45.8
Hma1.2p1_1572F.1_g291420 Hydrangea macrophylla HOM05D002080 ORTHO05D002062 9.7e-11 70.9 101 46.5
Hma1.2p1_1572F.1_g291430 Hydrangea macrophylla HOM05D002080 ORTHO05D002062 9.7e-11 70.9 101 46.5
Hma1.2p1_2201F.1_g317038 Hydrangea macrophylla HOM05D002080 ORTHO05D002062 9.7e-11 70.9 101 46.5
FAN17G3122 Fragaria x ananassa HOM05D002080 ORTHO05D002062 1.3e-10 70.5 85 49.4
Medtr1g103420 Medicago truncatula HOM05D002080 ORTHO05D002062 1.3e-10 70.5 94 45.7
AUR62033664 Chenopodium quinoa HOM05D002080 ORTHO05D002062 1.7e-10 70.1 71 50.7
DCAR_024173 Daucus carota HOM05D002080 ORTHO05D002062 1.7e-10 70.1 66 53.0
BcaB04g19208 Brassica carinata HOM05D002080 ORTHO05D002062 2.2e-10 69.7 84 47.6
Ciclev10006770m.g Citrus clementina HOM05D002080 ORTHO05D002062 2.8e-10 69.3 90 45.6
VMungo1215G1901 Vigna mungo HOM05D002080 ORTHO05D002062 2.8e-10 69.3 98 42.9
CSS0036257 Camellia sinensis var. sinensis HOM05D002080 ORTHO05D002062 3.7e-10 68.9 85 47.1
Haze_11199 Corylus avellana HOM05D002080 ORTHO05D002062 3.7e-10 68.9 66 51.5
ECA240G3849 Erigeron canadensis HOM05D002080 ORTHO05D002062 3.7e-10 68.9 75 48.0
THA.LOC104808555 Tarenaya hassleriana HOM05D002080 ORTHO05D002062 3.7e-10 68.9 92 47.8
TPR.G5539 Trifolium pratense HOM05D002080 ORTHO05D002062 3.7e-10 68.9 75 49.3
TPR.G40685 Trifolium pratense HOM05D002080 ORTHO05D002062 4.8e-10 68.6 77 46.8
Actinidia40134 Actinidia chinensis HOM05D002080 ORTHO05D002062 6.3e-10 68.2 101 43.6
COL.COLO4_21514 Corchorus olitorius HOM05D002080 ORTHO05D002062 8.2e-10 67.8 48 58.3
SalBow2G0536 Salvia bowleyana HOM05D002080 ORTHO05D002062 8.2e-10 67.8 67 52.2
Hund10645 Selenicereus undatus HOM05D002080 ORTHO05D002062 8.2e-10 67.8 92 42.4
EL10Ac3g06481 Beta vulgaris HOM05D002080 ORTHO05D002062 1.1e-09 67.4 107 41.1
A03p42840 Brassica napus HOM05D002080 ORTHO05D002062 1.1e-09 67.4 84 46.4
Cpa.g.sc58.81 Carica papaya HOM05D002080 ORTHO05D002062 1.1e-09 67.4 84 45.2
Cc03_g04030 Coffea canephora HOM05D002080 ORTHO05D002062 1.1e-09 67.4 71 49.3
GSVIVG01018010001 Vitis vinifera HOM05D002080 ORTHO05D002062 1.1e-09 67.4 85 48.2
BcaC01g03434 Brassica carinata HOM05D002080 ORTHO05D002062 1.4e-09 67.0 96 43.8
C03p52630 Brassica napus HOM05D002080 ORTHO05D002062 1.4e-09 67.0 96 43.8
BolC3t17531H Brassica oleracea HOM05D002080 ORTHO05D002062 1.4e-09 67.0 96 43.8
MELO3C006518.2 Cucumis melo HOM05D002080 ORTHO05D002062 1.4e-09 67.0 97 41.2
CsaV3_3G013110 Cucumis sativus L. HOM05D002080 ORTHO05D002062 1.4e-09 67.0 97 41.2
Gorai.005G043900 Gossypium raimondii HOM05D002080 ORTHO05D002062 1.4e-09 67.0 97 42.3
Sopen03g001230 Solanum pennellii HOM05D002080 ORTHO05D002062 1.4e-09 67.0 163 33.7
FAN07G2964 Fragaria x ananassa HOM05D002080 ORTHO05D002062 1.8e-09 66.6 61 52.5
Psat2g189960 Pisum sativum HOM05D002080 ORTHO05D002062 1.8e-09 66.6 86 44.2
Aa31LG8G9140 Aethionema arabicum HOM05D002080 ORTHO05D002062 2.4e-09 66.2 86 45.3
Cfa008474 Carpinus fangiana HOM05D002080 ORTHO05D002062 2.4e-09 66.2 66 50.0
Oeu043024.1 Olea europaea HOM05D002080 ORTHO05D002062 2.4e-09 66.2 56 55.4
COL.COLO4_11869 Corchorus olitorius HOM05D002080 ORTHO05D002062 3.1e-09 65.9 83 44.6
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 3.1e-09 65.9 55 56.4
Gohir.A02G033100 Gossypium hirsutum HOM05D002080 ORTHO05D002062 3.1e-09 65.9 97 42.3
SGA_v2.0_scaffold165G38279 Striga asiatica HOM05D002080 ORTHO05D002062 3.1e-09 65.9 88 43.2
TWI09G1378 Tripterygium wilfordii HOM05D002080 ORTHO05D002062 3.1e-09 65.9 91 48.4
BraA03t13431Z Brassica rapa HOM05D002080 ORTHO05D002062 4.1e-09 65.5 84 45.2
Migut.G00357 Erythranthe guttata HOM05D002080 ORTHO05D002062 4.1e-09 65.5 87 44.8
Lj6C605T16 Lonicera japonica HOM05D002080 ORTHO05D002062 4.1e-09 65.5 84 46.4
Prupe.1G017000 Prunus persica HOM05D002080 ORTHO05D002062 4.1e-09 65.5 57 52.6
CSS0001547 Camellia sinensis var. sinensis HOM05D002080 ORTHO05D002062 5.3e-09 65.1 57 52.6
CANSAT78G0377 Cannabis sativa HOM05D002080 ORTHO05D002062 5.3e-09 65.1 100 38.0
Sed0000687 Sechium edule HOM05D002080 ORTHO05D002062 5.3e-09 65.1 97 42.3
Manes.03G176300 Manihot esculenta HOM05D002080 ORTHO05D002062 7.0e-09 64.7 50 56.0
Solyc03g005210.4 Solanum lycopersicum HOM05D002080 ORTHO05D002062 7.0e-09 64.7 164 36.0
Eucgr.B01055 Eucalyptus grandis HOM05D002080 ORTHO05D002062 9.1e-09 64.3 56 57.1
Sc13g0004550 Simmondsia chinensis HOM05D002080 ORTHO05D002062 9.1e-09 64.3 98 40.8
ClCG05G005050 Citrullus lanatus HOM05D002080 ORTHO05D002062 1.2e-08 63.9 97 44.3
MD13G1196300 Malus domestica HOM05D002080 ORTHO05D002062 1.2e-08 63.9 70 47.1
ClCG06G006320 Citrullus lanatus HOM05D002080 ORTHO05D002062 1.6e-08 63.5 89 41.6
Migut.N00195 Erythranthe guttata HOM05D002080 ORTHO05D002062 1.6e-08 63.5 80 50.0
Sed0012217 Sechium edule HOM05D002080 ORTHO05D002062 1.6e-08 63.5 103 41.7
TWI73G0640 Tripterygium wilfordii HOM05D002080 ORTHO05D002062 1.6e-08 63.5 74 48.6
MSTRG.4043 Avicennia marina HOM05D002080 ORTHO05D002062 2.0e-08 63.2 110 40.0
Ca_24422_v3 Cicer arietinum L. HOM05D002080 ORTHO05D002062 2.0e-08 63.2 86 41.9
Gohir.D02G039600 Gossypium hirsutum HOM05D002080 ORTHO05D002062 2.7e-08 62.8 97 40.2
Lsat_1_v5_gn_7_68660 Lactuca sativa HOM05D002080 ORTHO05D002062 2.7e-08 62.8 81 42.0
Nitab4.5_0000321g0180 Nicotiana tabacum HOM05D002080 ORTHO05D002062 2.7e-08 62.8 85 43.5
RcHm_v2.0_Chr4g0415631 Rosa chinensis HOM05D002080 ORTHO05D002062 2.7e-08 62.8 62 53.2
CsaV3_7G022400 Cucumis sativus L. HOM05D002080 ORTHO05D002062 3.5e-08 62.4 50 52.0
Gohir.D12G003700 Gossypium hirsutum HOM05D002080 ORTHO05D002062 3.5e-08 62.4 89 40.4
Gorai.008G003500 Gossypium raimondii HOM05D002080 ORTHO05D002062 3.5e-08 62.4 89 40.4
PSO210G7737 Papaver somniferum HOM05D002080 ORTHO05D002062 3.5e-08 62.4 100 43.0
Duzib133G0739 Durio zibethinus HOM05D002080 ORTHO05D002062 4.5e-08 62.0 92 39.1
FAN12G0521 Fragaria x ananassa HOM05D002080 ORTHO05D002062 5.9e-08 61.6 93 39.8
arahy.Tifrunner.gnm1.ann1.N9G1J6 Arachis hypogaea HOM05D002080 ORTHO05D002062 1.0e-07 60.8 110 37.3
Migut.G00358 Erythranthe guttata HOM05D002080 ORTHO05D002062 1.0e-07 60.8 90 40.0
Oeu053323.1 Olea europaea HOM05D002080 ORTHO05D002062 1.0e-07 60.8 45 53.3
Hund12102 Selenicereus undatus HOM05D002080 ORTHO05D002062 1.0e-07 60.8 66 48.5
Migut.G00359 Erythranthe guttata HOM05D002080 ORTHO05D002062 1.3e-07 60.5 45 55.6
Gohir.A12G004000 Gossypium hirsutum HOM05D002080 ORTHO05D002062 1.3e-07 60.5 89 40.4
Nitab4.5_0006783g0020 Nicotiana tabacum HOM05D002080 ORTHO05D002062 1.3e-07 60.5 84 44.0
Sabra10G0058300 Salix brachista HOM05D002080 ORTHO05D002062 1.3e-07 60.5 114 37.7
TAR365G0570 Trochodendron aralioides HOM05D002080 ORTHO05D002062 1.3e-07 60.5 93 40.9
ATR0665G334 Amborella trichopoda HOM05D002080 ORTHO05D002062 1.7e-07 60.1 89 42.7
arahy.Tifrunner.gnm1.ann1.W2PYYJ Arachis hypogaea HOM05D002080 ORTHO05D002062 1.7e-07 60.1 110 34.5
Carub.0001s0478 Capsella rubella HOM05D002080 ORTHO05D002062 1.7e-07 60.1 67 47.8
Glyma.01G235000 Glycine max HOM05D002080 ORTHO05D002062 1.7e-07 60.1 102 36.3
MD16G1196800 Malus domestica HOM05D002080 ORTHO05D002062 1.7e-07 60.1 54 50.0
Peaxi162Scf00131g00007 Petunia axillaris HOM05D002080 ORTHO05D002062 1.7e-07 60.1 87 40.2
Ah.07g204240 Amaranthus hybridus HOM05D002080 ORTHO05D002062 2.2e-07 59.7 92 44.6
SalBow2G1818 Salvia bowleyana HOM05D002080 ORTHO05D002062 2.2e-07 59.7 101 39.6
THA.LOC104816089 Tarenaya hassleriana HOM05D002080 ORTHO05D002062 2.2e-07 59.7 64 51.6
TAR260G0001 Trochodendron aralioides HOM05D002080 ORTHO05D002062 2.2e-07 59.7 88 42.0
Oeu053322.1 Olea europaea HOM05D002080 ORTHO05D002062 2.9e-07 59.3 68 45.6
BcaB04g20509 Brassica carinata HOM05D002080 ORTHO05D002062 3.8e-07 58.9 84 42.9
Ciclev10024613m.g Citrus clementina HOM05D002080 ORTHO05D002062 3.8e-07 58.9 101 36.6
Glyma.10G246800 Glycine max HOM05D002080 ORTHO05D002062 3.8e-07 58.9 46 52.2
Lalb_Chr16g0376491 Lupinus albus HOM05D002080 ORTHO05D002062 3.8e-07 58.9 81 40.7
PSO761G0650 Papaver somniferum HOM05D002080 ORTHO05D002062 3.8e-07 58.9 100 41.0
Sopen06g019200 Solanum pennellii HOM05D002080 ORTHO05D002062 3.8e-07 58.9 85 38.8
SGA_v2.0_scaffold191G40495 Striga asiatica HOM05D002080 ORTHO05D002062 3.8e-07 58.9 72 43.1
TWI18G0838 Tripterygium wilfordii HOM05D002080 ORTHO05D002062 3.8e-07 58.9 76 42.1
C01p41700 Brassica napus HOM05D002080 ORTHO05D002062 5.0e-07 58.5 96 39.6
Thhalv10008963m.g Eutrema salsugineum HOM05D002080 ORTHO05D002062 5.0e-07 58.5 67 47.8
Gohir.A09G217200 Gossypium hirsutum HOM05D002080 ORTHO05D002062 5.0e-07 58.5 90 42.2
HanXRQChr09g0247391 Helianthus annuus HOM05D002080 ORTHO05D002062 5.0e-07 58.5 45 53.3
Nn6g34118 Nelumbo nucifera HOM05D002080 ORTHO05D002062 5.0e-07 58.5 78 41.0
A01p32540 Brassica napus HOM05D002080 ORTHO05D002062 6.5e-07 58.2 80 43.8
A10p04170 Brassica napus HOM05D002080 ORTHO05D002062 6.5e-07 58.2 90 43.3
PSO210G4618 Papaver somniferum HOM05D002080 ORTHO05D002062 6.5e-07 58.2 46 50.0
PSO832G0902 Papaver somniferum HOM05D002080 ORTHO05D002062 6.5e-07 58.2 46 50.0
PGR004G2148 Punica granatum HOM05D002080 ORTHO05D002062 6.5e-07 58.2 68 42.6
Sp1g04330 Schrenkiella parvula HOM05D002080 ORTHO05D002062 6.5e-07 58.2 67 47.8
AL1G15290 Arabidopsis lyrata HOM05D002080 ORTHO05D002062 8.5e-07 57.8 71 46.5
AL3G36910 Arabidopsis lyrata HOM05D002080 ORTHO05D002062 8.5e-07 57.8 96 40.6
Sp3g20380 Schrenkiella parvula HOM05D002080 ORTHO05D002062 8.5e-07 57.8 96 39.6
Sc24g0003300 Simmondsia chinensis HOM05D002080 ORTHO05D002062 8.5e-07 57.8 83 41.0
Solyc06g054030.2 Solanum lycopersicum HOM05D002080 ORTHO05D002062 8.5e-07 57.8 85 38.8
TAR633G1826 Trochodendron aralioides HOM05D002080 ORTHO05D002062 8.5e-07 57.8 51 52.9
GSVIVG01001181001 Vitis vinifera HOM05D002080 ORTHO05D002062 8.5e-07 57.8 57 47.4
DCAR_018435 Daucus carota HOM05D004691 ORTHO05D005552 1.1e-06 57.4 71 40.8
Lsat_1_v5_gn_9_49380 Lactuca sativa HOM05D004691 ORTHO05D005552 1.1e-06 57.4 74 44.6
Rhsim04G0200100 Rhododendron simsii HOM05D002080 ORTHO05D002062 1.1e-06 57.4 104 41.3
AT1G05450 Arabidopsis thaliana HOM05D002080 ORTHO05D002062 1.5e-06 57.0 71 45.1
BcaC05g24384 Brassica carinata HOM05D002080 ORTHO05D002062 1.5e-06 57.0 67 47.8
C05p03800 Brassica napus HOM05D002080 ORTHO05D002062 1.5e-06 57.0 67 47.8
BolC5t29157H Brassica oleracea HOM05D002080 ORTHO05D002062 1.5e-06 57.0 67 47.8
BraA10t42686Z Brassica rapa HOM05D002080 ORTHO05D002062 1.5e-06 57.0 103 42.7
CANSAT25G3902 Cannabis sativa HOM05D002080 ORTHO05D002062 1.5e-06 57.0 101 34.7
Lj5g0014009 Lotus japonicus HOM05D002080 ORTHO05D002062 1.5e-06 57.0 44 50.0
PGSC0003DMG400016267 Solanum tuberosum HOM05D002080 ORTHO05D002062 1.5e-06 57.0 96 40.6
Aa31LG1G19190 Aethionema arabicum HOM05D002080 ORTHO05D002062 1.9e-06 56.6 68 45.6
Aqoxy5G00440 Aquilegia oxysepala HOM05D002080 ORTHO05D002062 1.9e-06 56.6 90 43.3
A05p26060 Brassica napus HOM05D002080 ORTHO05D002062 1.9e-06 56.6 83 38.6
CARHR004940 Cardamine hirsuta HOM05D002080 ORTHO05D002062 1.9e-06 56.6 68 44.1
CARHR098500 Cardamine hirsuta HOM05D002080 ORTHO05D002062 1.9e-06 56.6 97 40.2
Gohir.D09G219600 Gossypium hirsutum HOM05D002080 ORTHO05D002062 1.9e-06 56.6 110 34.5
Gorai.006G240600 Gossypium raimondii HOM05D002080 ORTHO05D002062 1.9e-06 56.6 110 34.5
Lsat_1_v5_gn_2_11060 Lactuca sativa HOM05D002080 ORTHO05D002062 1.9e-06 56.6 76 42.1
Ca_10868_v3 Cicer arietinum L. HOM05D002080 ORTHO05D002062 2.5e-06 56.2 45 48.9
Phvul.007G058600 Phaseolus vulgaris HOM05D002080 ORTHO05D002062 2.5e-06 56.2 42 54.8
Hund10590 Selenicereus undatus HOM05D002080 ORTHO05D002062 2.5e-06 56.2 83 36.1
TAR365G0049 Trochodendron aralioides HOM05D002080 ORTHO05D002062 2.5e-06 56.2 86 41.9
BcaB02g06858 Brassica carinata HOM05D002080 ORTHO05D002062 3.2e-06 55.8 77 45.5
MD11G1282200 Malus domestica HOM05D002080 ORTHO05D002062 3.2e-06 55.8 123 34.1
VMungo0720G0541 Vigna mungo HOM05D002080 ORTHO05D002062 3.2e-06 55.8 42 54.8
Atru.chr5.1481 Acer truncatum HOM05D002080 ORTHO05D002062 4.2e-06 55.5 92 38.0
QL06p001734 Quercus lobata HOM05D002080 ORTHO05D002062 4.2e-06 55.5 43 53.5
Thecc.01G274800 Theobroma cacao HOM05D002080 ORTHO05D002062 4.2e-06 55.5 92 37.0
AT3G22620 Arabidopsis thaliana HOM05D002080 ORTHO05D002062 5.5e-06 55.1 95 36.8
Carub.0003s2276 Capsella rubella HOM05D002080 ORTHO05D002062 5.5e-06 55.1 95 36.8
MBI19_g08302_MAGBIO Magnolia biondii HOM05D002080 ORTHO05D002062 5.5e-06 55.1 46 50.0
Thhalv10021547m.g Eutrema salsugineum HOM05D002080 ORTHO05D002062 7.2e-06 54.7 83 38.6
FvH4_2g23210 Fragaria vesca HOM05D002080 ORTHO05D002062 7.2e-06 54.7 46 50.0
FAN24G0687 Fragaria x ananassa HOM05D002080 ORTHO05D002062 7.2e-06 54.7 46 50.0
Lj6A602T57 Lonicera japonica HOM05D002080 ORTHO05D002062 7.2e-06 54.7 126 31.7
Manes.01G205600 Manihot esculenta HOM05D002080 ORTHO05D002062 7.2e-06 54.7 101 37.6
RcHm_v2.0_Chr6g0290481 Rosa chinensis HOM05D002080 ORTHO05D002062 7.2e-06 54.7 82 41.5
Actinidia00783 Actinidia chinensis HOM05D002080 ORTHO05D002062 9.4e-06 54.3 86 39.5
Dinv44555 Davidia involucrata HOM05D002080 ORTHO05D002062 9.4e-06 54.3 40 55.0
FvH4_4g16090 Fragaria vesca HOM05D002080 ORTHO05D002062 9.4e-06 54.3 43 51.2
Rhsim13G0026900 Rhododendron simsii HOM05D002080 ORTHO05D002062 9.4e-06 54.3 79 41.8


User provided reference genes

Program Settings