Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 2.1e-129 465.7 233 100.0
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 7.0e-117 424.1 238 90.8
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 2.0e-95 352.8 243 76.1
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 3.0e-91 339.0 245 74.7
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 2.5e-90 335.9 245 73.5
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 2.8e-49 199.5 255 51.0
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.1e-45 187.6 253 49.0
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 7.1e-45 184.9 243 46.1
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.2e-44 184.1 205 50.2
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 1.3e-43 180.6 255 45.1
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 7.4e-42 174.9 251 45.0
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 7.4e-42 174.9 236 45.8
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 1.6e-41 173.7 80 100.0
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 3.7e-41 172.6 253 47.8
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 4.8e-41 172.2 244 45.9
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.1e-40 171.0 246 47.2
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 1.1e-40 171.0 246 43.1
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.4e-40 170.6 246 46.3
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 1.4e-40 170.6 254 42.9
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 1.4e-40 170.6 242 45.5
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 1.8e-40 170.2 255 42.0
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 3.1e-40 169.5 236 43.6
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 4.1e-40 169.1 248 44.8
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 6.9e-40 168.3 247 44.1
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 4.5e-39 165.6 247 43.7
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.0e-38 164.5 213 47.9
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 2.2e-38 163.3 294 38.8
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 2.2e-38 163.3 251 41.8
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 2.9e-38 162.9 248 45.2
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 3.8e-38 162.5 247 43.3
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 6.5e-38 161.8 198 49.0
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 8.5e-38 161.4 246 42.7
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 8.5e-38 161.4 246 41.9
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 1.4e-37 160.6 189 48.7
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 1.4e-37 160.6 242 44.2
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 1.4e-37 160.6 253 43.5
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 2.5e-37 159.8 253 44.3
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 4.2e-37 159.1 256 42.6
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 4.2e-37 159.1 242 42.1
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 9.3e-37 157.9 259 44.0
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 1.6e-36 157.1 253 42.7
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 2.7e-36 156.4 232 45.3
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 4.6e-36 155.6 168 51.2
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.3e-35 154.1 238 42.9
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.3e-35 154.1 208 47.6
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 2.3e-35 153.3 271 39.1
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 3.0e-35 152.9 253 44.3
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 5.1e-35 152.1 205 44.9
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 6.7e-35 151.8 251 40.2
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 1.1e-34 151.0 253 39.1
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 1.5e-34 150.6 252 41.3
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.3e-34 149.4 235 45.1
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.3e-34 149.4 235 45.1
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 4.3e-34 149.1 227 41.4
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 5.7e-34 148.7 253 42.3
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 5.7e-34 148.7 237 41.8
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 9.7e-34 147.9 219 45.7
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 3.7e-33 146.0 223 41.7
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 3.7e-33 146.0 262 42.7
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 3.7e-33 146.0 253 39.9
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 6.3e-33 145.2 252 40.5
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 8.2e-33 144.8 253 39.9
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 8.2e-33 144.8 246 43.1
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 1.1e-32 144.4 220 43.6
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 1.1e-32 144.4 215 42.3
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 1.4e-32 144.1 246 43.1
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 2.4e-32 143.3 247 43.7
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 2.4e-32 143.3 237 42.6
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 2.4e-32 143.3 247 43.7
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 4.1e-32 142.5 247 41.3
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.0e-31 140.2 247 42.9
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 2.6e-31 139.8 266 38.3
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 4.5e-31 139.0 153 52.3
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 2.2e-30 136.7 252 38.9
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 1.9e-29 133.7 253 38.7
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 1.9e-29 133.7 253 40.3
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 2.5e-29 133.3 243 38.3
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 7.9e-28 128.3 245 40.4
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 1.7e-25 120.6 185 41.1
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 6.3e-25 118.6 245 38.4
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 3.4e-23 112.8 131 51.1
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 4.5e-23 112.5 215 41.4
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 5.9e-23 112.1 134 44.8
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 2.6e-15 86.7 164 36.6
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 8.8e-11 71.6 244 31.6
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 2.8e-09 66.6 128 40.6
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.2e-07 61.2 79 46.8
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 1.7e-06 57.4 169 30.2


User provided reference genes

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