Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 4.9e-131 471.1 230 100.0
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.3e-130 466.8 230 98.3
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 7.9e-129 463.8 230 98.7
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.4e-124 448.4 230 94.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.7e-121 438.7 230 93.0
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.2e-118 427.2 232 90.1
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.4e-117 426.4 232 90.5
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.5e-115 417.5 232 87.1
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.0e-107 393.7 232 84.9
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.0e-100 369.4 233 76.8
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.0e-100 369.4 233 77.7
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.9e-98 362.8 233 76.0
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.5e-98 362.5 177 97.7
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 5.5e-98 361.3 224 78.1
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 5.5e-98 361.3 224 78.1
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 7.2e-98 360.9 232 75.4
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 9.4e-98 360.5 234 76.1
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.6e-97 359.8 224 78.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.6e-97 358.6 233 76.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.6e-97 358.6 233 76.0
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.4e-96 356.7 233 74.7
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.8e-96 356.3 233 76.0
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 3.0e-96 355.5 233 76.0
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.0e-96 355.5 233 75.5
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 8.8e-96 354.0 255 69.8
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.1e-95 353.6 239 74.5
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.5e-95 353.2 210 81.9
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 3.3e-95 352.1 234 74.8
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.3e-94 350.1 233 73.4
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.7e-94 349.7 224 75.4
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.8e-94 349.0 224 75.9
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.8e-94 349.0 232 72.4
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-94 348.6 224 76.3
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.7e-94 348.6 234 73.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.3e-94 347.8 233 74.7
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 8.2e-94 347.4 233 73.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.4e-93 346.7 224 75.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.8e-93 346.3 234 73.5
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.4e-93 345.9 232 71.1
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.4e-93 345.9 224 73.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.4e-93 345.9 228 74.1
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 4.1e-93 345.1 232 73.7
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.1e-93 345.1 233 73.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 5.3e-93 344.7 233 72.5
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 5.3e-93 344.7 233 73.0
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 7.0e-93 344.4 215 77.7
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.2e-92 343.6 235 72.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-92 343.2 224 74.1
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.5e-92 343.2 224 74.1
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.0e-92 342.8 232 74.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-92 342.8 233 73.0
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.6e-92 342.4 231 71.9
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.6e-92 342.4 233 72.1
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.6e-92 342.4 224 74.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.5e-92 341.7 213 78.4
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 4.5e-92 341.7 237 72.6
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 4.5e-92 341.7 224 75.0
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.5e-92 341.7 227 72.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 7.7e-92 340.9 232 73.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.0e-91 340.5 232 69.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.0e-91 340.5 213 77.9
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.7e-91 339.7 231 70.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.2e-91 339.3 212 78.8
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.2e-91 339.3 212 78.8
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.2e-91 339.3 233 71.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 3.8e-91 338.6 224 74.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.0e-91 338.2 216 75.9
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 5.0e-91 338.2 222 73.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 6.5e-91 337.8 231 73.2
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.5e-91 337.4 214 73.8
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.2e-90 335.1 224 72.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 7.2e-90 334.3 216 74.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 7.2e-90 334.3 220 74.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.6e-89 333.2 248 67.3
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.1e-89 332.8 213 76.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.6e-89 332.0 248 67.3
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 6.1e-89 331.3 226 70.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 8.0e-89 330.9 222 73.4
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.0e-88 330.5 224 71.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.4e-88 330.1 235 72.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.4e-88 330.1 235 72.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.8e-88 329.7 234 72.6
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-88 329.3 213 75.1
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.3e-88 329.3 277 62.1
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.0e-88 328.9 226 73.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 2.0e-87 326.2 219 74.0
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.0e-87 326.2 214 72.0
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.6e-87 325.9 211 75.4
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.3e-86 323.6 233 69.5
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.3e-86 323.6 233 69.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.8e-86 321.6 232 66.4
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.8e-85 319.7 224 70.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 4.1e-85 318.5 224 70.5
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 4.5e-84 315.1 215 70.2
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.7e-84 314.3 215 69.8
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 7.7e-84 314.3 206 71.8
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.0e-83 313.9 215 69.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.7e-83 313.2 220 69.1
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 5.0e-83 311.6 216 69.0
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 5.0e-83 311.6 226 67.7
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 5.0e-83 311.6 215 70.2
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.1e-82 310.5 220 68.6
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.1e-82 310.5 220 68.6
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.5e-82 310.1 242 65.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.9e-82 309.7 235 67.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.5e-82 309.3 215 67.4
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 3.2e-82 308.9 215 67.4
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.2e-82 308.9 211 73.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 5.5e-82 308.1 215 68.4
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 5.5e-82 308.1 215 68.4
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.5e-82 308.1 213 69.0
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 7.2e-82 307.8 212 69.8
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 7.2e-82 307.8 213 69.0
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 9.4e-82 307.4 224 65.6
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 9.4e-82 307.4 215 68.4
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.2e-81 307.0 227 68.3
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.7e-81 305.8 229 64.6
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 8.0e-81 304.3 213 67.6
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.8e-80 303.1 233 67.4
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.2e-79 300.4 213 68.5
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.7e-78 295.4 158 91.1
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 4.8e-78 295.0 237 65.4
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 9.1e-77 290.8 239 65.3
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 5.9e-76 288.1 230 64.8
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 7.2e-74 281.2 185 73.0
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.6e-73 278.9 213 67.6
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-68 263.8 177 71.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.1e-66 257.3 215 57.2
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.8e-65 252.7 212 59.4
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 8.0e-65 251.1 233 58.8
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 8.0e-65 251.1 223 60.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.5e-63 246.9 161 75.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 6.3e-62 241.5 193 65.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 4.5e-60 235.3 157 70.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 2.3e-56 223.0 158 72.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.0e-55 219.9 235 50.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.9e-53 213.4 216 51.9
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.1e-50 204.1 235 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.5e-50 203.0 215 51.2
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.1e-49 199.9 185 58.4
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 4.7e-49 198.7 124 77.4
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.6e-44 182.2 120 73.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.9e-42 176.8 176 53.4
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 8.1e-41 171.4 124 65.3
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 3.0e-35 152.9 99 71.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 5.1e-35 152.1 213 38.5
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.1e-34 151.0 90 80.0
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.8e-33 146.4 215 39.5
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.4e-32 143.3 150 52.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 8.9e-32 141.4 156 50.0
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 4.9e-30 135.6 74 90.5
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.9e-29 133.7 90 70.0
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.2e-29 131.3 66 93.9
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 2.5e-26 123.2 104 62.5
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.8e-24 117.1 89 62.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 4.4e-23 112.5 192 32.8
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.8e-22 109.4 78 69.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 9.3e-21 104.8 127 42.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.6e-18 94.7 73 64.4
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-17 94.0 53 84.9
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-17 93.6 75 61.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.8e-17 93.2 73 63.0
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.6e-17 92.8 75 61.3
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 7.6e-15 85.1 223 29.6
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.7e-12 76.6 60 61.7
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-11 74.3 48 70.8
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 8.7e-11 71.6 138 37.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.6e-10 68.9 52 65.4
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.8e-08 63.9 40 70.0
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.6e-07 60.1 52 55.8
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.6e-07 58.5 32 84.4
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 3.8e-06 56.2 40 62.5


User provided reference genes

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