Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 8.0e-98 360.5 197 100.0
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 9.8e-96 353.6 197 98.0
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 1.1e-94 350.1 197 98.0
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.9e-87 325.5 197 86.3
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 6.6e-84 314.3 194 80.9
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 1.9e-83 312.8 184 87.0
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.4e-81 306.6 198 78.8
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 1.4e-73 280.0 199 71.4
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.8e-73 279.6 200 72.0
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 4.0e-73 278.5 198 71.7
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.2e-72 276.9 202 69.8
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 1.2e-72 276.9 198 71.2
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.0e-72 276.2 198 74.2
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 3.4e-72 275.4 198 69.7
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 7.6e-72 274.2 199 70.4
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 9.9e-72 273.9 198 69.2
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.3e-71 273.5 195 73.3
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.2e-71 272.7 198 72.2
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 2.2e-71 272.7 198 73.2
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 2.9e-71 272.3 197 72.1
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 4.9e-71 271.6 200 71.0
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 4.9e-71 271.6 197 71.1
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 6.4e-71 271.2 199 69.8
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 1.1e-70 270.4 199 71.4
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.1e-70 270.4 193 72.5
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 1.4e-70 270.0 198 70.2
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.9e-70 269.6 196 72.4
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 2.4e-70 269.2 196 72.4
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 3.2e-70 268.9 199 69.3
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 3.2e-70 268.9 197 71.1
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 3.2e-70 268.9 196 69.4
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 4.2e-70 268.5 198 68.2
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 5.4e-70 268.1 198 70.7
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 2.7e-69 265.8 199 69.3
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 4.6e-69 265.0 201 70.6
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 7.8e-69 264.2 199 67.8
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 7.8e-69 264.2 199 67.8
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 7.8e-69 264.2 199 68.3
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 1.0e-68 263.8 199 67.8
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 1.7e-68 263.1 197 70.1
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 2.3e-68 262.7 200 66.5
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 3.0e-68 262.3 199 67.3
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 3.9e-68 261.9 200 66.0
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 5.1e-68 261.5 193 69.9
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 6.6e-68 261.2 200 66.0
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 1.9e-67 259.6 200 67.5
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.9e-67 259.6 198 68.7
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 4.3e-67 258.5 197 67.0
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 5.6e-67 258.1 200 65.5
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 9.6e-67 257.3 232 60.3
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 1.6e-66 256.5 196 69.9
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.6e-66 256.5 203 64.5
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.6e-66 256.5 203 64.5
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 2.8e-66 255.8 197 67.0
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 2.8e-66 255.8 197 67.0
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 3.6e-66 255.4 197 67.0
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 3.6e-66 255.4 204 65.2
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 6.2e-66 254.6 200 68.0
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 8.1e-66 254.2 197 66.5
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 8.1e-66 254.2 197 67.0
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 1.1e-65 253.8 202 64.9
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 1.4e-65 253.4 197 64.5
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 1.4e-65 253.4 197 66.5
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 1.4e-65 253.4 199 65.8
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 2.4e-65 252.7 197 65.5
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 2.4e-65 252.7 198 66.2
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 2.4e-65 252.7 198 66.2
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 2.4e-65 252.7 197 66.5
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 3.1e-65 252.3 196 65.8
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 5.3e-65 251.5 197 64.5
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 6.9e-65 251.1 195 66.7
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 6.9e-65 251.1 186 72.0
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 9.0e-65 250.8 198 66.2
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.5e-64 250.0 197 65.5
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.0e-64 249.6 199 64.3
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 3.4e-64 248.8 202 64.9
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 2.2e-63 246.1 197 65.5
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 6.4e-63 244.6 197 64.5
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.9e-62 243.0 197 63.5
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 3.2e-62 242.3 197 64.5
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 4.2e-62 241.9 199 63.8
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 5.4e-62 241.5 197 61.9
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 7.1e-62 241.1 234 56.0
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 1.6e-61 240.0 197 63.5
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 4.6e-61 238.4 185 64.3
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 1.7e-60 236.5 199 64.3
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 3.9e-60 235.3 196 64.8
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 6.2e-58 228.0 201 60.7
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 1.4e-57 226.9 199 60.8
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.8e-57 226.5 201 60.2
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 9.0e-57 224.2 201 59.7
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 2.0e-56 223.0 197 62.4
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 4.5e-56 221.9 196 60.2
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 7.6e-56 221.1 197 61.9
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 1.3e-55 220.3 190 61.1
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.2e-53 213.8 282 45.7
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 1.3e-52 210.3 196 58.2
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 1.8e-52 209.9 195 58.5
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 3.0e-52 209.1 159 68.6
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 5.1e-52 208.4 195 57.4
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 1.5e-51 206.8 191 57.1
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.5e-51 206.1 195 57.9
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 2.1e-50 203.0 196 56.6
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 3.7e-50 202.2 186 57.5
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 5.8e-48 194.9 193 53.9
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 2.1e-42 176.4 152 61.8
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 1.0e-36 157.5 193 47.2
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 2.2e-34 149.8 188 43.1
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 1.8e-28 130.2 120 58.3
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.0e-27 126.7 120 58.3
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 1.7e-26 123.6 188 38.8
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 8.5e-23 111.3 118 53.4
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 1.5e-19 100.5 125 49.6
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 3.8e-15 85.9 54 68.5
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 8.5e-15 84.7 55 76.4
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 7.2e-14 81.6 77 53.2
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 2.3e-12 76.6 211 28.4
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 4.8e-10 68.9 201 33.3
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 4.5e-08 62.4 35 77.1


User provided reference genes

Program Settings