Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 1.7e-38 162.2 78 100.0
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.7e-14 82.4 48 81.2
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.7e-14 82.4 48 81.2
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 3.7e-14 81.3 46 84.8
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 3.7e-14 81.3 47 83.0
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 3.7e-14 81.3 47 83.0
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 3.7e-14 81.3 47 83.0
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 8.3e-14 80.1 47 80.9
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 2.7e-12 75.1 46 80.4
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 5.9e-12 73.9 47 76.6
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 5.9e-12 73.9 47 72.3
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 7.8e-12 73.6 46 76.1
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 1.0e-11 73.2 48 68.8
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 5.0e-11 70.9 46 69.6
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 1.1e-10 69.7 49 67.3
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 1.1e-10 69.7 47 70.2
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 1.5e-10 69.3 48 72.9
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 1.9e-10 68.9 47 68.1
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 1.9e-10 68.9 70 51.4
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 2.5e-10 68.6 47 68.1
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 2.5e-10 68.6 47 68.1
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.5e-10 68.6 47 68.1
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.5e-10 68.6 47 68.1
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.5e-10 68.6 47 68.1
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 3.3e-10 68.2 47 66.0
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 3.3e-10 68.2 46 73.9
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 3.3e-10 68.2 47 70.2
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 4.3e-10 67.8 46 67.4
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 5.6e-10 67.4 47 68.1
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 9.5e-10 66.6 47 68.1
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 9.5e-10 66.6 47 68.1
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 9.5e-10 66.6 47 68.1
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 9.5e-10 66.6 46 71.7
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 9.5e-10 66.6 47 68.1
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.2e-09 66.2 47 68.1
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 1.2e-09 66.2 47 68.1
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.2e-09 66.2 47 68.1
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 1.2e-09 66.2 47 68.1
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 1.2e-09 66.2 47 66.0
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 1.2e-09 66.2 47 68.1
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 1.6e-09 65.9 47 68.1
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 2.8e-09 65.1 45 68.9
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 2.8e-09 65.1 47 66.0
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 2.8e-09 65.1 47 66.0
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 3.6e-09 64.7 47 63.8
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 4.7e-09 64.3 47 63.8
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 4.7e-09 64.3 47 63.8
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 4.7e-09 64.3 47 61.7
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 4.7e-09 64.3 47 66.0
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 4.7e-09 64.3 47 66.0
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 4.7e-09 64.3 47 63.8
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 6.2e-09 63.9 35 85.7
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 6.2e-09 63.9 33 90.9
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 6.2e-09 63.9 46 69.6
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 6.2e-09 63.9 35 82.9
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 6.2e-09 63.9 47 63.8
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 6.2e-09 63.9 47 59.6
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 8.0e-09 63.5 47 61.7
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 8.0e-09 63.5 47 66.0
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 1.0e-08 63.2 36 80.6
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 1.0e-08 63.2 47 61.7
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 1.0e-08 63.2 47 61.7
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 1.4e-08 62.8 47 66.0
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 1.4e-08 62.8 47 61.7
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 1.4e-08 62.8 47 61.7
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 1.4e-08 62.8 47 63.8
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 1.8e-08 62.4 44 65.9
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 2.3e-08 62.0 46 63.0
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 2.3e-08 62.0 48 60.4
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 4.0e-08 61.2 47 59.6
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 5.2e-08 60.8 37 78.4
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 6.8e-08 60.5 47 63.8
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 8.9e-08 60.1 33 81.8
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 8.9e-08 60.1 45 62.2
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 8.9e-08 60.1 35 77.1
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 1.2e-07 59.7 46 58.7
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.5e-07 59.3 47 61.7
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.5e-07 59.3 47 59.6
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 2.0e-07 58.9 44 63.6
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 2.6e-07 58.5 44 63.6
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 2.6e-07 58.5 44 63.6
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 3.4e-07 58.2 47 59.6
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 3.4e-07 58.2 45 64.4
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 3.4e-07 58.2 45 60.0
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 4.4e-07 57.8 35 77.1
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 9.8e-07 56.6 33 78.8
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 3.7e-06 54.7 55 52.7
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 4.9e-06 54.3 32 75.0
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 4.9e-06 54.3 32 75.0
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 4.9e-06 54.3 54 50.0
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 6.4e-06 53.9 35 68.6
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 6.4e-06 53.9 32 75.0
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 6.4e-06 53.9 43 60.5


User provided reference genes

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