Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 0.0e+00 1948.3 1000 100.0
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 0.0e+00 1516.5 1195 71.0
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 0.0e+00 1514.6 1000 81.0
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 0.0e+00 1419.1 998 77.0
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 0.0e+00 1298.5 1012 71.4
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.8e-312 1074.7 674 85.3
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 7.4e-248 861.3 1023 53.0
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 2.4e-238 829.7 1068 49.2
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 3.9e-233 812.4 1020 50.4
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 6.9e-230 801.6 1042 49.0
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 1.5e-229 800.4 1026 49.9
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 2.0e-221 773.5 1040 48.0
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 1.7e-220 770.4 1031 47.7
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 5.0e-220 768.8 1034 48.6
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.2e-218 764.2 1028 48.8
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 6.7e-217 758.4 1036 47.0
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 2.0e-216 756.9 1039 48.3
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 5.7e-216 755.4 1047 47.4
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.9e-212 743.0 914 51.5
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 6.5e-212 741.9 1047 45.7
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 2.5e-211 740.0 1043 47.4
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 3.6e-210 736.1 1041 47.1
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 3.6e-210 736.1 1091 45.2
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 8.8e-209 731.5 1024 47.0
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 9.7e-208 728.0 1027 46.3
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 1.3e-207 727.6 1063 46.8
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 2.2e-207 726.9 1013 47.6
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 1.7e-204 717.2 1026 45.8
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 5.0e-204 715.7 1011 47.8
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 7.2e-203 711.8 1054 45.2
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 8.0e-202 708.4 1155 44.1
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 1.0e-201 708.0 1090 45.3
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 1.8e-201 707.2 1037 45.4
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 9.7e-200 701.4 609 64.0
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 4.8e-199 699.1 986 46.2
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 1.4e-198 697.6 1069 44.1
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 2.4e-198 696.8 1023 45.3
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 4.1e-198 696.0 1066 44.6
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.2e-197 694.5 1119 43.3
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 5.9e-197 692.2 1055 45.3
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 2.2e-196 690.3 1110 43.1
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 3.2e-195 686.4 1053 45.1
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 7.2e-195 685.3 1022 45.3
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 3.6e-194 682.9 1036 44.8
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 1.2e-192 677.9 1079 42.8
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 1.2e-192 677.9 1071 43.4
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 7.5e-192 675.2 1152 42.7
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.2e-191 673.7 728 54.8
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 2.8e-191 673.3 1006 45.0
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 4.8e-191 672.5 1069 42.4
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 4.8e-191 672.5 1040 44.1
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 9.1e-190 668.3 1139 42.4
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 1.7e-188 664.1 1112 41.6
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 2.3e-188 663.7 1074 45.0
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 3.8e-188 662.9 1032 42.1
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 8.0e-186 655.2 1034 43.3
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 2.3e-185 653.7 1113 41.6
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 2.4e-182 643.7 1131 41.6
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 1.2e-181 641.3 491 72.5
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.7e-180 637.5 1111 41.1
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 6.6e-180 635.6 1147 42.2
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 5.6e-179 632.5 1120 41.1
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 9.5e-179 631.7 1011 42.7
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 2.3e-177 627.1 1062 41.8
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 8.9e-177 625.2 1012 42.1
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 1.7e-175 620.9 758 51.2
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 1.1e-171 608.2 974 42.8
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 4.3e-171 606.3 1043 40.6
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 4.3e-171 606.3 1043 40.5
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 2.3e-169 600.5 1048 41.7
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 1.2e-168 598.2 1030 40.6
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.7e-167 594.3 1031 41.2
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 5.4e-166 589.3 1136 38.6
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 6.0e-165 585.9 963 42.6
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 1.1e-163 581.6 792 47.3
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 1.5e-163 581.3 798 47.2
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 1.5e-163 581.3 798 47.2
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 7.3e-163 578.9 798 47.0
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 7.3e-163 578.9 798 47.0
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 2.1e-162 577.4 1147 38.9
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 3.1e-161 573.5 1006 41.0
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 6.4e-159 565.8 1108 38.4
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 1.4e-158 564.7 444 70.5
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 4.1e-158 563.1 1131 37.8
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 7.1e-158 562.4 718 49.4
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 7.8e-157 558.9 820 44.5
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 5.1e-156 556.2 1056 39.7
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 5.6e-155 552.7 885 42.8
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 5.6e-155 552.7 537 59.4
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.1e-154 550.8 285 98.9
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 2.8e-154 550.4 984 39.3
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 8.1e-154 548.9 1065 38.4
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 2.5e-147 527.3 977 38.4
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 5.6e-147 526.2 1028 37.7
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 7.8e-141 505.8 540 55.9
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 3.3e-139 500.4 765 44.1
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 1.3e-135 488.4 668 47.9
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 5.1e-132 476.5 500 54.6
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 4.5e-128 463.4 819 39.9
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 1.1e-126 458.8 971 36.5
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 1.9e-126 458.0 764 39.8
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 1.2e-125 455.3 1028 37.6
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 4.2e-118 430.3 809 39.4
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 1.1e-115 422.2 379 60.2
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 5.7e-115 419.9 852 37.9
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 7.2e-110 402.9 603 46.6
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 3.0e-92 344.4 737 38.3
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 3.1e-89 334.3 183 95.6
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.5e-86 325.5 330 56.1
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 7.0e-73 280.0 203 68.0
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.5e-72 277.3 373 48.0
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 7.7e-72 276.6 324 47.8
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.1e-61 241.9 345 47.8
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 6.6e-55 220.3 487 38.2
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 5.6e-46 190.7 520 33.1
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.8e-45 188.3 508 33.3
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 4.9e-42 177.6 147 66.0
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 9.2e-41 173.3 299 34.8
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.5e-35 156.0 137 55.5
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 1.3e-29 136.3 205 43.9
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 2.2e-26 125.6 351 28.8
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 9.3e-25 120.2 220 34.1
Solyc09g074700.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 5.1e-23 114.4 58 100.0
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.5e-22 112.1 337 30.3
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.8e-19 100.9 83 54.2
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.2e-17 95.1 52 90.4
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.2e-17 94.7 86 50.0
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.7e-16 92.0 70 68.6
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.5e-14 85.5 66 60.6
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 1.3e-13 83.2 70 57.1
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 4.5e-11 74.7 93 52.7
Actinidia00674 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.2e-10 72.4 354 28.5
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 2.5e-09 68.9 163 31.9
Actinidia32250 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.1e-08 65.9 346 28.6
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 2.7e-08 65.5 290 27.2
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 6.0e-08 64.3 69 43.5
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 7.9e-08 63.9 109 35.8
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.5e-06 59.7 268 25.7
Actinidia32248 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.9e-06 59.3 59 57.6
MD15G1247000 Malus domestica HOM05D002848 ORTHO05D003043 3.3e-06 58.5 107 34.6
Mapoly0111s0041 Marchantia polymorpha HOM05D002848 ORTHO05D003043 4.3e-06 58.2 88 40.9


User provided reference genes

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