Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.0e-157 560.1 292 100.0
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.1e-155 552.4 292 98.3
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-153 546.6 292 98.6
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.8e-153 544.3 291 96.9
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 3.3e-124 448.7 291 82.1
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-116 423.3 295 79.0
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.7e-115 418.7 292 79.1
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 6.9e-114 414.5 295 75.9
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 4.4e-100 368.6 289 70.6
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 7.7e-97 357.8 298 68.1
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 6.5e-96 354.8 268 70.9
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 3.6e-94 349.0 224 81.7
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.0e-93 345.9 223 80.7
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 6.8e-93 344.7 227 80.2
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 6.8e-93 344.7 266 70.7
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.4e-92 342.0 224 79.9
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 7.5e-92 341.3 235 76.6
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 9.8e-92 340.9 224 79.9
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-91 340.1 224 78.6
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.2e-91 339.7 224 78.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.2e-91 339.7 228 78.1
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.8e-91 339.3 227 77.5
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.7e-91 339.0 224 78.6
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.8e-91 338.6 227 78.0
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 6.3e-91 338.2 227 77.5
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.1e-90 337.4 264 68.2
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.4e-90 337.0 229 76.4
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.4e-90 336.3 225 77.3
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 5.4e-90 335.1 231 77.5
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 5.4e-90 335.1 224 77.7
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.1e-90 334.3 236 73.7
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.6e-89 333.6 222 77.5
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 2.7e-89 332.8 226 77.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 3.5e-89 332.4 227 77.1
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 4.5e-89 332.0 272 65.8
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.5e-89 332.0 224 76.8
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 5.9e-89 331.6 224 76.8
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.0e-88 330.9 225 78.7
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.7e-88 330.1 226 77.0
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.2e-88 329.7 234 73.9
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.2e-88 329.7 222 77.9
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.2e-88 329.7 225 78.2
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 2.9e-88 329.3 227 74.9
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.9e-88 329.3 233 74.2
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 5.0e-88 328.6 233 75.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 5.0e-88 328.6 224 78.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 6.5e-88 328.2 233 75.1
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.1e-87 327.4 224 77.7
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.5e-87 327.0 219 79.5
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.5e-87 327.0 226 75.2
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.9e-87 326.6 227 74.4
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.9e-87 326.6 264 66.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 3.2e-87 325.9 233 74.7
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.2e-87 325.9 224 77.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 3.2e-87 325.9 224 77.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.2e-87 325.9 227 74.4
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.2e-87 325.9 264 67.4
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.2e-87 325.5 226 74.8
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.2e-87 325.5 228 74.6
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.5e-87 325.1 231 72.7
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.5e-87 325.1 228 72.8
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 7.2e-87 324.7 276 65.2
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 7.2e-87 324.7 227 74.0
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 9.5e-87 324.3 224 76.8
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.5e-87 324.3 226 75.7
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 9.5e-87 324.3 211 79.6
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.1e-86 323.2 226 75.7
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.1e-86 323.2 226 75.7
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.6e-86 322.4 218 75.7
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 4.7e-86 322.0 232 73.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.7e-86 322.0 211 78.7
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.7e-86 322.0 226 75.7
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 4.7e-86 322.0 219 76.7
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 6.1e-86 321.6 222 76.1
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 6.1e-86 321.6 228 74.1
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.0e-85 320.9 267 65.9
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-85 320.5 232 72.8
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.4e-85 320.5 232 72.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.4e-85 320.5 232 71.6
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.4e-85 320.5 265 64.5
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.8e-85 320.1 221 76.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.8e-85 320.1 234 73.9
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.3e-85 319.7 227 74.4
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.0e-85 319.3 232 72.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 6.8e-85 318.2 226 74.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.2e-84 317.4 227 74.4
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.2e-84 317.4 231 71.4
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.5e-84 317.0 289 61.9
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.0e-84 316.6 227 72.7
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.0e-84 316.6 221 74.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.0e-84 316.6 232 72.0
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 4.4e-84 315.5 225 74.2
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 4.4e-84 315.5 225 74.2
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 5.7e-84 315.1 221 74.2
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 5.7e-84 315.1 231 72.3
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 9.8e-84 314.3 220 73.6
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.7e-83 313.5 227 72.2
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.8e-83 312.8 220 73.6
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.7e-83 312.4 221 73.8
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 3.7e-83 312.4 218 75.7
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 3.7e-83 312.4 220 75.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 3.7e-83 312.4 292 62.0
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.1e-82 310.8 272 62.1
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.8e-82 310.1 222 74.8
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.8e-82 310.1 226 72.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.1e-82 309.3 264 65.5
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.2e-82 307.8 249 68.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.2e-82 307.8 222 74.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.6e-81 307.0 239 69.0
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.6e-81 307.0 225 71.6
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.7e-81 306.2 235 69.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.1e-78 296.6 222 72.1
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 2.8e-78 296.2 237 67.1
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 8.0e-78 294.7 224 69.2
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.0e-77 294.3 214 70.1
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 6.8e-77 291.6 218 69.3
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.7e-75 287.0 219 67.6
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 3.7e-75 285.8 232 65.9
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.8e-74 283.5 292 56.5
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.5e-73 279.3 272 59.6
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.6e-73 278.9 217 68.2
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.6e-73 278.9 225 66.2
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.0e-72 276.2 293 57.3
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 3.9e-72 275.8 229 65.9
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 8.0e-70 268.1 177 76.8
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 8.9e-69 264.6 177 78.5
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.9e-66 256.9 190 72.6
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 9.2e-66 254.6 218 61.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 5.6e-63 245.4 182 73.6
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-61 240.7 205 67.3
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 5.2e-61 238.8 157 80.3
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 5.2e-61 238.8 333 46.2
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 6.8e-61 238.4 157 80.3
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.7e-59 233.8 190 68.9
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.4e-58 229.9 173 71.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 5.4e-58 228.8 226 56.6
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 5.4e-58 228.8 226 56.6
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 2.7e-57 226.5 186 65.6
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.5e-55 220.7 208 61.5
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-54 217.6 159 74.8
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 8.1e-54 214.9 180 63.3
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.3e-53 213.4 218 57.8
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 3.4e-52 209.5 184 60.3
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.3e-51 207.6 165 68.5
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 9.6e-47 191.4 185 54.6
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 5.2e-45 185.7 234 49.1
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 7.1e-42 175.3 153 58.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 9.0e-29 131.7 256 34.4
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 4.9e-27 125.9 224 38.4
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.7e-25 120.2 68 80.9
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.1e-22 110.5 207 37.2
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.9e-19 100.1 203 34.5
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 3.9e-16 89.7 283 29.7
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.3e-13 79.3 243 30.9
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 2.9e-11 73.6 41 80.5
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.5e-11 72.0 46 78.3
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.5e-10 69.3 162 37.0
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.1e-09 67.4 52 67.3
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.0e-08 65.1 51 64.7
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 4.3e-07 59.7 182 29.1
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.7e-06 56.6 40 67.5


User provided reference genes

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