Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 2.6e-95 352.1 179 100.0
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 4.7e-89 331.3 210 84.3
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 2.5e-74 282.3 151 95.4
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 5.3e-72 274.6 181 82.3
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 3.8e-70 268.5 181 80.7
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 2.5e-61 239.2 179 73.2
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 2.3e-51 206.1 179 60.3
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 1.5e-50 203.4 166 66.9
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 3.1e-48 195.7 163 61.3
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 3.8e-46 188.7 157 62.4
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 6.5e-46 188.0 126 72.2
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 6.5e-46 188.0 157 61.1
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 2.5e-45 186.0 179 59.2
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 4.2e-45 185.3 171 57.9
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 4.2e-45 185.3 171 59.1
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 4.2e-45 185.3 116 73.3
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 5.5e-45 184.9 167 61.1
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 2.1e-44 183.0 168 57.1
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 2.7e-44 182.6 170 56.5
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 2.7e-44 182.6 182 58.2
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 3.6e-44 182.2 170 60.0
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 6.1e-44 181.4 169 58.6
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 6.1e-44 181.4 173 58.4
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 1.4e-43 180.3 120 69.2
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 3.0e-43 179.1 169 59.2
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 5.1e-43 178.3 127 67.7
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 5.1e-43 178.3 127 67.7
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 2.0e-42 176.4 173 55.5
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 2.0e-42 176.4 137 66.4
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 4.3e-42 175.3 132 64.4
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 5.7e-42 174.9 144 59.0
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 5.7e-42 174.9 182 54.4
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 1.3e-41 173.7 138 65.2
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 1.7e-41 173.3 157 56.1
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 2.8e-41 172.6 167 54.5
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 2.8e-41 172.6 171 55.0
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 2.8e-41 172.6 118 72.0
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 2.8e-41 172.6 133 62.4
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 3.7e-41 172.2 174 56.3
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 4.8e-41 171.8 156 59.0
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 8.2e-41 171.0 116 68.1
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 8.2e-41 171.0 160 53.8
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 1.4e-40 170.2 107 74.8
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.8e-40 169.9 121 66.1
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.8e-40 169.9 105 75.2
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 3.1e-40 169.1 129 67.4
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 4.1e-40 168.7 152 59.2
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 5.3e-40 168.3 168 51.8
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 5.3e-40 168.3 150 57.3
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 5.3e-40 168.3 174 54.0
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 9.1e-40 167.5 152 59.2
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 9.1e-40 167.5 169 56.2
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 2.0e-39 166.4 173 53.8
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 2.6e-39 166.0 129 66.7
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 2.6e-39 166.0 131 62.6
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 7.7e-39 164.5 129 65.9
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 1.7e-38 163.3 127 61.4
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 2.2e-38 162.9 105 72.4
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 2.2e-38 162.9 142 57.7
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 2.2e-38 162.9 171 49.7
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 2.9e-38 162.5 176 54.0
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 3.8e-38 162.2 142 59.9
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 6.5e-38 161.4 135 59.3
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 6.5e-38 161.4 124 64.5
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 8.5e-38 161.0 109 68.8
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 4.2e-37 158.7 123 56.9
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 5.5e-37 158.3 128 60.2
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 5.5e-37 158.3 139 56.1
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 5.5e-37 158.3 128 60.2
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 5.5e-37 158.3 128 60.2
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 7.2e-37 157.9 127 59.8
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 7.2e-37 157.9 139 55.4
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 9.4e-37 157.5 128 60.2
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 9.4e-37 157.5 123 61.0
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 9.4e-37 157.5 128 60.2
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 1.2e-36 157.1 123 61.0
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 2.1e-36 156.4 142 58.5
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 1.0e-35 154.1 170 50.0
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 3.0e-35 152.5 100 73.0
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 2.0e-34 149.8 105 64.8
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 2.0e-34 149.8 94 72.3
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 2.2e-33 146.4 88 73.9
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 3.7e-33 145.6 182 46.7
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 1.8e-32 143.3 192 47.9
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 7.0e-32 141.4 168 42.9
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 1.5e-29 133.7 166 43.4
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 4.2e-29 132.1 130 50.0
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 2.1e-28 129.8 144 47.9
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 3.6e-28 129.0 94 60.6
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 6.1e-28 128.3 102 59.8
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 1.4e-27 127.1 117 57.3
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.8e-27 126.7 94 63.8
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 2.3e-27 126.3 145 52.4
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 8.8e-27 124.4 127 55.1
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 8.8e-27 124.4 105 54.3
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 2.0e-26 123.2 99 57.6
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 3.5e-23 112.5 137 48.2
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.2e-20 104.0 72 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 2.7e-20 102.8 99 48.5
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 2.6e-18 96.3 75 60.0
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 1.3e-14 84.0 87 54.0
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 5.0e-14 82.0 59 62.7
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 6.5e-14 81.6 91 51.6
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 9.4e-13 77.8 109 49.5
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 5.2e-11 72.0 175 36.6
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 1.5e-10 70.5 75 54.7
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 9.8e-10 67.8 122 36.9


User provided reference genes

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