Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 5.8e-131 471.1 271 100.0
SEGI_31611 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 1.5e-62 243.8 159 79.2
Cfa023003 Carpinus fangiana HOM05D001966 ORTHO05D011119 3.5e-59 232.6 116 95.7
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 7.7e-59 231.5 258 54.3
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 7.2e-57 224.9 114 93.9
SEGI_24666 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 2.6e-54 216.5 174 68.4
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.3e-50 203.4 114 86.8
BcaNung07086 Brassica carinata HOM05D001966 ORTHO05D011119 3.0e-47 193.0 100 94.0
arahy.Tifrunner.gnm1.ann1.H5WC3R Arachis hypogaea HOM05D001966 ORTHO05D011119 1.7e-45 187.2 87 98.9
arahy.Tifrunner.gnm1.ann1.1DF8CR Arachis hypogaea HOM05D001966 ORTHO05D011119 4.9e-45 185.7 87 97.7
arahy.Tifrunner.gnm1.ann1.KT8FLV Arachis hypogaea HOM05D001966 ORTHO05D011119 1.2e-43 181.0 87 95.4
arahy.Tifrunner.gnm1.ann1.2KV113 Arachis hypogaea HOM05D000580 ORTHO05D011119 5.0e-42 175.6 87 93.1
arahy.Tifrunner.gnm1.ann1.FF8QKQ Arachis hypogaea HOM05D001966 ORTHO05D011119 4.3e-41 172.6 101 83.2
ScUNg0000270 Simmondsia chinensis HOM05D001966 ORTHO05D011119 5.8e-38 162.2 114 73.7
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 9.8e-38 161.4 111 74.8
arahy.Tifrunner.gnm1.ann1.CV40CV Arachis hypogaea HOM05D001966 ORTHO05D010127 2.9e-37 159.8 79 96.2
Nitab4.5_0003644g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010127 2.9e-37 159.8 94 79.8
arahy.Tifrunner.gnm1.ann1.KXW2A6 Arachis hypogaea HOM05D001966 ORTHO05D011119 3.2e-36 156.4 76 96.1
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-35 154.1 153 81.7
Gohir.D02G156751 Gossypium hirsutum HOM05D001966 ORTHO05D011119 1.0e-34 151.4 75 93.3
Gorai.005G175800 Gossypium raimondii HOM05D001966 ORTHO05D011119 6.6e-34 148.7 75 92.0
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 1.8e-31 140.6 144 59.7
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 1.8e-31 140.6 144 59.7
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 1.8e-31 140.6 144 59.7
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 1.8e-31 140.6 144 59.7
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 1.8e-31 140.6 144 59.7
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 1.8e-31 140.6 144 59.7
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 8.3e-29 131.7 134 58.2
arahy.Tifrunner.gnm1.ann1.MHEL4J Arachis hypogaea HOM05D001966 ORTHO05D011119 1.9e-28 130.6 89 76.4
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 1.9e-28 130.6 139 56.1
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 2.4e-28 130.2 184 42.9
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.1e-28 129.4 113 63.7
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 1.6e-27 127.5 134 57.5
Gohir.1Z049692 Gossypium hirsutum HOM05D001966 ORTHO05D011119 7.8e-27 125.2 58 100.0
Gohir.1Z050866 Gossypium hirsutum HOM05D001966 ORTHO05D011119 7.8e-27 125.2 58 100.0
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.0e-26 124.8 146 54.1
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 1.3e-26 124.4 67 89.6
arahy.Tifrunner.gnm1.ann1.9XT8BN Arachis hypogaea HOM05D001966 ORTHO05D010127 3.0e-26 123.2 58 98.3
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 3.0e-26 123.2 430 31.9
Gohir.A01G119800 Gossypium hirsutum HOM05D001966 ORTHO05D011119 6.6e-26 122.1 58 98.3
Hma1.2p1_0051F.1_g029255 Hydrangea macrophylla HOM05D001966 ORTHO05D011119 1.1e-25 121.3 58 96.6
Gohir.A10G178000 Gossypium hirsutum HOM05D001966 ORTHO05D011119 5.6e-25 119.0 58 94.8
Gorai.007G237900 Gossypium raimondii HOM05D001966 ORTHO05D011119 5.6e-25 119.0 58 94.8
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.1e-24 117.1 115 67.8
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 2.8e-24 116.7 138 55.1
Potri.011G074067 Populus trichocarpa HOM05D001966 ORTHO05D011119 2.8e-24 116.7 58 94.8
Migut.B01248 Erythranthe guttata HOM05D001966 ORTHO05D011119 6.2e-24 115.5 71 80.3
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-23 113.6 115 60.0
Phvul.001G037800 Phaseolus vulgaris HOM05D001966 ORTHO05D011119 4.0e-23 112.8 58 89.7
Gohir.A05G366050 Gossypium hirsutum HOM05D001966 ORTHO05D011119 6.8e-23 112.1 58 89.7
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 2.0e-22 110.5 115 64.3
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 3.4e-22 109.8 115 59.1
Oeu012760.1 Olea europaea HOM05D001966 ORTHO05D010127 4.4e-22 109.4 62 82.3
EL10As15g24133 Beta vulgaris HOM05D004182 ORTHO05D007321 2.2e-21 107.1 135 74.8
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 2.2e-21 107.1 69 79.7
BolSC35t60712H Brassica oleracea HOM05D004182 ORTHO05D007321 2.2e-21 107.1 69 79.7
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.2e-21 107.1 69 79.7
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 2.2e-21 107.1 69 79.7
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 2.2e-21 107.1 69 79.7
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 2.2e-21 107.1 69 79.7
BraSC58t46465Z Brassica rapa HOM05D004182 ORTHO05D007321 2.2e-21 107.1 69 79.7
Gohir.D05G230250 Gossypium hirsutum HOM05D001966 ORTHO05D011119 2.9e-21 106.7 58 82.8
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.9e-20 104.0 115 53.9
BraSC143t45651Z Brassica rapa HOM05D004182 ORTHO05D007321 1.2e-19 101.3 79 68.4
Glyma.11G218300 Glycine max HOM05D001966 ORTHO05D011119 4.6e-19 99.4 69 73.9
BraSC59t46543Z Brassica rapa HOM05D004182 ORTHO05D007321 6.0e-19 99.0 66 77.3
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 8.7e-18 95.1 69 72.5
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 1.1e-17 94.7 113 58.4
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.1e-17 94.7 104 56.7
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.1e-17 94.7 104 56.7
Nitab4.5_0006306g0030 Nicotiana tabacum HOM05D001966 ORTHO05D010127 2.5e-17 93.6 108 56.5
Nitab4.5_0014528g0010 Nicotiana tabacum HOM05D010488 ORTHO05D011667 4.3e-17 92.8 49 89.8
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 5.6e-17 92.4 106 54.7
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 9.6e-17 91.7 61 77.0
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 1.2e-16 91.3 170 41.8
arahy.Tifrunner.gnm1.ann1.VLT00F Arachis hypogaea HOM05D001966 ORTHO05D011119 2.8e-16 90.1 45 95.6
Manes.13G063850 Manihot esculenta HOM05D001966 ORTHO05D011119 2.8e-16 90.1 59 76.3
TPR.G40147 Trifolium pratense HOM05D003168 ORTHO05D011119 1.1e-15 88.2 63 65.1
Sc05g0009610 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.8e-15 87.4 42 97.6
arahy.Tifrunner.gnm1.ann1.0KS2YP Arachis hypogaea HOM05D004182 ORTHO05D007321 6.9e-15 85.5 70 65.7
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.0e-15 85.1 100 52.0
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.0e-15 85.1 100 52.0
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.0e-15 85.1 100 52.0
Gohir.A04G110920 Gossypium hirsutum HOM05D001966 ORTHO05D011119 2.0e-14 84.0 58 70.7
Gohir.A04G110980 Gossypium hirsutum HOM05D001966 ORTHO05D011119 2.0e-14 84.0 58 70.7
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 5.8e-14 82.4 111 55.9
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 4.9e-13 79.3 112 47.3
Sc23g0003920 Simmondsia chinensis HOM05D000806 ORTHO05D002320 4.9e-13 79.3 84 64.3
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 6.4e-13 79.0 105 49.5
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 3.2e-12 76.6 40 90.0
SEGI_13516 Sequoiadendron giganteum HOM05D004182 ORTHO05D007321 4.2e-12 76.3 67 61.2
Sopen09g015240 Solanum pennellii HOM05D000004 ORTHO05D011466 4.2e-12 76.3 39 94.9
Nitab4.5_0000289g0040 Nicotiana tabacum HOM05D001966 ORTHO05D011119 5.4e-12 75.9 40 85.0
arahy.Tifrunner.gnm1.ann1.Y35SJI Arachis hypogaea HOM05D004182 ORTHO05D007321 2.1e-11 73.9 39 89.7
Gohir.A05G323708 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.7e-11 73.6 40 87.5
ECA246G3863 Erigeron canadensis HOM05D002697 ORTHO05D003087 7.8e-11 72.0 35 91.4
Sopen04g018020 Solanum pennellii HOM05D001966 ORTHO05D011119 1.0e-10 71.6 44 84.1
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 5.1e-10 69.3 36 100.0
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 5.1e-10 69.3 36 100.0
arahy.Tifrunner.gnm1.ann1.P0IFIP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.5e-09 67.0 39 82.1
arahy.Tifrunner.gnm1.ann1.CSY78X Arachis hypogaea HOM05D000216 ORTHO05D000634 4.3e-09 66.2 33 84.8
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 4.3e-09 66.2 36 97.2
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 7.3e-09 65.5 91 48.4
VMungo0720G0883 Vigna mungo HOM05D004182 ORTHO05D007321 9.6e-09 65.1 39 82.1
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 1.3e-08 64.7 36 94.4
Migut.I00342 Erythranthe guttata HOM05D004182 ORTHO05D007321 2.1e-08 63.9 36 94.4
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-07 60.5 60 55.0
BolSC44t60815H Brassica oleracea HOM05D004182 ORTHO05D010127 3.1e-07 60.1 27 100.0
BraSC103t45434Z Brassica rapa HOM05D004182 ORTHO05D010127 3.1e-07 60.1 27 100.0
BraSC25t45903Z Brassica rapa HOM05D004182 ORTHO05D010127 3.1e-07 60.1 27 100.0
BraSC59t46507Z Brassica rapa HOM05D004182 ORTHO05D010127 3.1e-07 60.1 27 100.0
Gorai.007G258700 Gossypium raimondii HOM05D004182 ORTHO05D007321 4.0e-07 59.7 40 75.0
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 6.9e-07 58.9 36 86.1
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 6.9e-07 58.9 36 86.1
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 6.9e-07 58.9 36 86.1
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 6.9e-07 58.9 36 86.1
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 6.9e-07 58.9 36 86.1
VMungo1127G1475 Vigna mungo HOM05D000959 ORTHO05D000775 6.9e-07 58.9 69 50.7
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 1.2e-06 58.2 40 67.5
BraSC59t46527Z Brassica rapa HOM05D004182 ORTHO05D010127 1.2e-06 58.2 26 100.0
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 1.5e-06 57.8 36 86.1
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 1.5e-06 57.8 36 86.1
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 1.5e-06 57.8 36 86.1
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.5e-06 57.8 36 86.1
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.5e-06 57.8 36 86.1
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 2.0e-06 57.4 31 93.5
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 2.0e-06 57.4 36 86.1
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 2.0e-06 57.4 36 86.1
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 2.0e-06 57.4 36 86.1
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 2.0e-06 57.4 36 86.1
A08p09050 Brassica napus HOM05D001966 ORTHO05D010127 2.6e-06 57.0 27 96.3
Gohir.A07G125450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.4e-06 56.6 39 71.8
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.5e-06 56.2 36 86.1
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 5.8e-06 55.8 36 83.3
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 5.8e-06 55.8 36 86.1
Gohir.D10G118433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 9.9e-06 55.1 39 64.1


User provided reference genes

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