Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 2.0e-74 282.3 139 100.0
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.1e-72 276.6 139 97.8
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.9e-69 265.8 139 94.2
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.9e-69 265.8 139 94.2
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.8e-59 230.7 142 82.4
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 9.1e-56 220.3 129 83.7
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 1.2e-39 166.8 130 60.8
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.6e-39 166.4 137 59.1
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 4.6e-39 164.9 137 58.4
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 4.6e-39 164.9 129 62.8
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 7.8e-39 164.1 139 59.0
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 8.6e-38 160.6 85 92.9
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 5.6e-37 157.9 132 62.1
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 7.3e-37 157.5 138 56.5
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 1.6e-36 156.4 129 58.1
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 1.6e-36 156.4 130 58.5
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 2.1e-36 156.0 120 60.8
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 3.6e-36 155.2 129 57.4
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 6.2e-36 154.5 141 55.3
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.4e-35 153.3 119 60.5
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 1.4e-35 153.3 120 58.3
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 1.4e-35 153.3 135 56.3
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 1.8e-35 152.9 129 57.4
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 1.8e-35 152.9 131 57.3
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 3.1e-35 152.1 134 56.7
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 5.2e-35 151.4 122 58.2
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 6.8e-35 151.0 137 55.5
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 6.8e-35 151.0 115 60.0
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.2e-34 150.2 135 54.8
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.2e-34 150.2 135 54.8
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 1.5e-34 149.8 130 54.6
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 1.5e-34 149.8 130 56.2
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 1.5e-34 149.8 120 58.3
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 2.0e-34 149.4 135 54.1
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 2.6e-34 149.1 129 53.5
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 2.6e-34 149.1 136 54.4
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.6e-34 149.1 131 55.7
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 2.6e-34 149.1 132 53.0
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 2.6e-34 149.1 120 58.3
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 4.4e-34 148.3 132 55.3
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 7.5e-34 147.5 130 54.6
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 7.5e-34 147.5 130 54.6
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 7.5e-34 147.5 135 54.1
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 9.8e-34 147.1 124 55.6
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 9.8e-34 147.1 136 52.9
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.3e-33 146.7 121 57.9
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 1.7e-33 146.4 113 60.2
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.7e-33 146.4 132 52.3
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 1.7e-33 146.4 139 51.8
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 2.2e-33 146.0 135 53.3
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 3.7e-33 145.2 121 57.9
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 1.1e-32 143.7 137 51.1
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 2.7e-31 139.0 130 54.6
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 1.0e-30 137.1 125 53.6
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 1.3e-30 136.7 132 51.5
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 1.3e-30 136.7 138 52.2
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 5.1e-30 134.8 119 55.5
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 1.1e-29 133.7 111 55.0
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 1.1e-29 133.7 122 52.5
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.5e-29 133.3 125 51.2
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 1.9e-29 132.9 126 53.2
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 4.3e-29 131.7 120 54.2
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 4.3e-29 131.7 128 50.8
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 1.6e-28 129.8 133 51.1
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 2.1e-28 129.4 125 50.4
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.7e-28 128.3 132 52.3
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 6.2e-28 127.9 126 50.8
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 4.0e-27 125.2 138 50.0
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 8.9e-27 124.0 133 47.4
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 2.6e-26 122.5 132 50.8
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.7e-25 119.8 122 51.6
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.9e-25 119.0 126 51.6
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 3.7e-25 118.6 120 50.8
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 6.4e-25 117.9 133 45.9
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.4e-24 115.9 113 52.2
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 4.1e-24 115.2 130 43.8
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 9.2e-24 114.0 120 47.5
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 2.1e-23 112.8 105 56.2
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.1e-23 112.8 129 41.9
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 6.0e-23 111.3 128 51.6
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 5.1e-22 108.2 104 54.8
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.1e-21 107.1 130 50.8
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 1.1e-21 107.1 136 41.9
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 4.3e-21 105.1 114 53.5
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.3e-21 104.4 129 41.1
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.2e-20 103.6 117 41.9
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.6e-20 102.1 107 48.6
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.2e-20 101.3 107 48.6
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 8.1e-20 100.9 136 39.7
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.4e-19 100.1 132 41.7
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 6.8e-19 97.8 131 41.2
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.9e-19 97.4 136 36.8
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.9e-19 97.4 130 40.8
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.2e-18 97.1 127 37.8
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.5e-18 96.7 98 53.1
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.5e-18 96.7 135 40.0
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.0e-18 96.3 130 40.0
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 9.9e-18 94.0 129 39.5
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.9e-17 92.4 136 35.3
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 9.3e-16 87.4 131 37.4
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.5e-15 85.5 121 34.7
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 3.5e-15 85.5 102 46.1
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 4.6e-15 85.1 60 66.7
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.0e-14 82.4 112 43.8
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 4.3e-13 78.6 120 32.5
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 4.3e-13 78.6 120 32.5
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 5.3e-11 71.6 134 31.3
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.9e-11 71.2 86 43.0
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.2e-10 70.5 112 34.8
PGR031G3557 Punica granatum HOM05D023640 ORTHO05D019592 5.8e-10 68.2 115 34.8
PGR031G1100 Punica granatum HOM05D023640 ORTHO05D007872 1.3e-09 67.0 103 38.8
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 4.9e-09 65.1 132 33.3
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 1.9e-08 63.2 113 31.9
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 2.4e-08 62.8 105 30.5
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 3.2e-08 62.4 82 45.1
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 2.1e-07 59.7 127 30.7
Glyma.20G137700 Glycine max HOM05D000022 ORTHO05D000071 3.5e-07 58.9 117 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 4.6e-07 58.5 111 32.4
Medtr6g055960 Medicago truncatula HOM05D000022 ORTHO05D010537 4.6e-07 58.5 46 52.2
Carub.0006s3315 Capsella rubella HOM05D000022 ORTHO05D000071 6.0e-07 58.2 46 56.5
Glyma.09G151700 Glycine max HOM05D000022 ORTHO05D010537 6.0e-07 58.2 46 52.2
Glyma.09G151400 Glycine max HOM05D000022 ORTHO05D010537 7.9e-07 57.8 46 52.2
TAR629G0888 Trochodendron aralioides HOM05D000022 ORTHO05D000306 7.9e-07 57.8 96 33.3
CARHR252350 Cardamine hirsuta HOM05D000022 ORTHO05D000071 1.0e-06 57.4 46 56.5
RcHm_v2.0_Chr2g0160231 Rosa chinensis HOM05D000022 ORTHO05D000306 1.0e-06 57.4 106 34.0
Medtr6g057680 Medicago truncatula HOM05D000022 ORTHO05D010537 1.3e-06 57.0 46 50.0
Medtr6g463660 Medicago truncatula HOM05D000022 ORTHO05D010537 1.3e-06 57.0 46 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.7e-06 56.6 119 31.1
Lsat_1_v5_gn_9_118840 Lactuca sativa HOM05D000022 ORTHO05D000306 1.7e-06 56.6 57 49.1
Lsat_1_v5_gn_9_118880 Lactuca sativa HOM05D000022 ORTHO05D000306 1.7e-06 56.6 57 49.1
Lsat_1_v5_gn_9_119440 Lactuca sativa HOM05D000022 ORTHO05D000306 1.7e-06 56.6 57 49.1
COL.COLO4_30654 Corchorus olitorius HOM05D000022 ORTHO05D000306 2.3e-06 56.2 84 38.1
Glyma.09G150500 Glycine max HOM05D000022 ORTHO05D010537 3.0e-06 55.8 46 52.2
VMungo1080G0766 Vigna mungo HOM05D000022 ORTHO05D000306 3.0e-06 55.8 68 42.6
Aa31LG9G9240 Aethionema arabicum HOM05D000022 ORTHO05D000071 3.9e-06 55.5 95 35.8
Medtr6g463400 Medicago truncatula HOM05D000022 ORTHO05D010537 3.9e-06 55.5 68 42.6
Phvul.005G112800 Phaseolus vulgaris HOM05D000022 ORTHO05D000306 3.9e-06 55.5 57 47.4
CSS0048814 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 5.1e-06 55.1 57 47.4
Medtr1g105650 Medicago truncatula HOM05D000022 ORTHO05D000071 5.1e-06 55.1 46 52.2
Medtr6g463830 Medicago truncatula HOM05D000022 ORTHO05D010537 5.1e-06 55.1 46 47.8
QL04p084349 Quercus lobata HOM05D000022 ORTHO05D000306 5.1e-06 55.1 59 47.5
SGA_v2.0_scaffold7G03889 Striga asiatica HOM05D000022 ORTHO05D000071 5.1e-06 55.1 43 53.5
Dinv10917 Davidia involucrata HOM05D000022 ORTHO05D000306 6.6e-06 54.7 87 39.1
Glyma.18G219200 Glycine max HOM05D000022 ORTHO05D010537 6.6e-06 54.7 83 33.7
RcHm_v2.0_Chr2g0160251 Rosa chinensis HOM05D000022 ORTHO05D000306 6.6e-06 54.7 74 40.5
VMungo1383G1694 Vigna mungo HOM05D000022 ORTHO05D010537 6.6e-06 54.7 50 50.0
Gohir.A06G208400 Gossypium hirsutum HOM05D000022 ORTHO05D000071 8.7e-06 54.3 46 54.3
Gohir.D06G212650 Gossypium hirsutum HOM05D000022 ORTHO05D000071 8.7e-06 54.3 46 54.3
Gohir.D06G212700 Gossypium hirsutum HOM05D000022 ORTHO05D000071 8.7e-06 54.3 46 54.3
Gorai.010G253400 Gossypium raimondii HOM05D000022 ORTHO05D000071 8.7e-06 54.3 46 54.3
Phvul.008G077500 Phaseolus vulgaris HOM05D000022 ORTHO05D010537 8.7e-06 54.3 46 50.0
Psat1g105680 Pisum sativum HOM05D000022 ORTHO05D010537 8.7e-06 54.3 46 47.8
THA.LOC104806261 Tarenaya hassleriana HOM05D000022 ORTHO05D000071 8.7e-06 54.3 95 34.7


User provided reference genes

Program Settings