Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 0.0e+00 1167.9 613 100.0
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 0.0e+00 1139.4 614 97.7
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 4.8e-234 814.7 651 71.4
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.9e-232 807.7 641 72.1
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.3e-194 683.7 648 63.7
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 7.2e-121 438.7 648 44.9
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.5e-114 415.6 687 44.1
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.0e-111 408.3 675 42.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 2.6e-110 403.7 622 43.1
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.3e-109 401.4 638 43.9
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 3.1e-108 396.7 649 41.9
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.0e-107 394.0 637 44.1
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.3e-105 386.3 636 43.4
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 5.6e-105 386.0 657 42.3
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 9.5e-105 385.2 355 62.5
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.8e-104 383.6 632 44.1
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.7e-104 382.9 659 41.7
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.6e-102 377.1 637 43.2
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 7.5e-102 375.6 637 43.2
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.7e-101 374.4 648 42.4
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.9e-101 373.6 644 41.3
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.4e-100 370.5 575 43.7
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.1e-100 369.8 667 41.1
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.9e-99 365.9 630 41.9
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.8e-99 365.5 621 41.5
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 7.8e-99 365.5 625 42.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.3e-98 364.0 586 42.8
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 6.6e-98 362.5 661 41.0
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.5e-97 361.3 705 39.1
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.3e-97 359.0 629 42.3
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 2.1e-96 357.5 629 41.0
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.1e-96 357.5 643 41.4
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 4.7e-96 356.3 330 63.6
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 4.7e-96 356.3 619 41.7
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.2e-96 355.9 628 41.6
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.4e-95 354.8 664 39.6
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.3e-95 354.0 622 41.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 8.9e-95 352.1 680 38.8
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.2e-93 347.4 630 41.6
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.9e-93 347.1 694 37.9
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 8.3e-93 345.5 678 39.5
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 8.3e-93 345.5 616 40.4
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.2e-92 343.6 631 39.5
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.2e-91 341.7 699 38.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.6e-91 341.3 646 39.9
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 2.0e-91 340.9 636 39.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.0e-91 340.9 614 42.3
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.0e-91 339.3 659 38.2
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.8e-91 339.0 623 38.5
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.0e-90 338.6 680 38.1
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.7e-90 337.8 617 39.1
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 6.6e-90 335.9 632 39.4
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.5e-89 334.7 700 38.0
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.5e-89 334.7 630 39.8
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.9e-89 334.3 625 40.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.9e-89 334.3 612 40.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 5.6e-89 332.8 644 38.5
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.2e-88 331.6 623 39.2
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.2e-88 331.6 622 40.2
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.1e-88 330.9 629 38.0
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 2.8e-88 330.5 306 60.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 4.7e-88 329.7 623 38.2
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 6.2e-88 329.3 620 40.8
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.1e-87 328.6 607 38.9
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.1e-87 328.6 608 41.4
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.1e-87 327.0 400 51.5
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 8.9e-87 325.5 362 51.9
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 8.9e-87 325.5 681 36.4
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.5e-86 324.7 608 39.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.5e-86 324.7 657 39.3
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.4e-86 323.2 615 39.2
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.4e-86 323.2 700 37.6
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.3e-85 321.6 599 41.2
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 2.2e-85 320.9 339 54.3
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.7e-85 320.1 608 38.8
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.9e-85 319.7 622 38.6
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.1e-84 316.6 634 37.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.4e-84 316.2 632 38.0
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 9.2e-84 315.5 611 38.8
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 9.2e-84 315.5 613 39.0
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.6e-83 314.7 638 37.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.6e-83 313.2 606 38.3
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 6.0e-83 312.8 555 40.2
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 6.0e-83 312.8 633 37.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.7e-82 311.2 606 37.8
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.5e-81 308.1 649 37.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-81 308.1 639 37.6
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.9e-81 307.8 626 37.5
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 3.3e-81 307.0 606 37.8
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.2e-80 305.1 653 34.3
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.1e-80 304.3 664 37.3
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.7e-80 303.1 659 36.1
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 4.7e-80 303.1 639 38.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 5.2e-79 299.7 607 38.2
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.4e-78 296.6 622 38.1
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 4.4e-78 296.6 626 37.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.6e-78 295.8 268 61.6
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 9.9e-78 295.4 423 46.6
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.3e-77 295.0 428 45.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.7e-77 294.7 580 39.7
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.8e-77 293.5 531 40.9
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 4.9e-77 293.1 620 35.5
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.4e-76 291.6 268 61.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 5.4e-76 289.7 618 37.1
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.2e-75 288.5 624 36.2
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.6e-75 288.1 645 35.8
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.1e-75 287.7 649 35.7
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 6.0e-75 286.2 760 34.7
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.3e-74 284.3 648 35.8
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 8.6e-74 282.3 606 36.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.3e-73 280.4 634 35.8
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 6.2e-72 276.2 632 35.6
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 3.1e-71 273.9 425 41.9
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.6e-70 270.8 616 35.1
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.6e-70 270.8 276 58.0
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.6e-70 270.8 276 58.0
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 4.4e-70 270.0 633 35.7
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.7e-69 268.1 636 36.8
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 7.1e-68 262.7 646 35.0
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.7e-67 260.8 551 39.2
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 4.6e-67 260.0 608 35.7
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 2.3e-66 257.7 616 35.1
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.3e-65 253.8 265 55.5
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 7.3e-65 252.7 635 33.7
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 2.1e-64 251.1 625 33.1
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.8e-63 248.1 640 34.1
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 4.5e-62 243.4 455 38.7
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.4e-60 237.7 631 34.2
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 5.4e-60 236.5 509 36.9
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 7.9e-59 232.6 221 62.9
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.8e-58 231.5 624 33.7
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 5.1e-58 229.9 216 63.0
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 6.2e-56 223.0 644 31.2
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.8e-55 221.5 571 32.6
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.0e-54 218.0 299 45.5
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 9.6e-49 199.1 617 30.8
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.4e-47 195.3 334 39.2
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.8e-46 189.9 607 31.8
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.7e-45 188.3 612 29.4
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.2e-45 188.0 231 47.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.9e-44 184.9 284 44.0
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 7.1e-44 183.0 463 35.6
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 6.7e-42 176.4 454 33.3
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.8e-40 171.0 181 58.0
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.2e-38 165.6 258 41.5
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 5.9e-38 163.3 348 34.5
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.7e-34 149.8 179 49.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.1e-33 149.1 614 29.0
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.6e-32 145.2 280 36.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 7.7e-30 136.3 122 64.8
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 4.2e-28 130.6 109 66.1
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 4.4e-25 120.6 219 34.7
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.7e-24 118.6 538 27.7
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.4e-23 115.5 118 56.8
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-23 115.5 187 42.2
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 5.3e-23 113.6 224 37.5
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.2e-21 108.2 246 35.4
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 7.2e-20 103.2 82 65.9
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 9.7e-17 92.8 191 34.0
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.2e-16 91.7 91 53.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 6.3e-16 90.1 90 55.6
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 4.1e-15 87.4 176 38.6
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 5.3e-15 87.0 57 73.7
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.5e-14 84.0 76 63.2
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 5.0e-13 80.5 207 30.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.9e-12 78.6 115 42.6
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 8.0e-11 73.2 129 37.2
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 2.3e-10 71.6 383 24.3
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.2e-10 70.5 120 38.3
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.2e-10 70.5 49 67.3
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.2e-10 70.5 49 67.3
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 5.2e-10 70.5 102 43.1
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 5.7e-09 67.0 142 38.7
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.5e-09 66.6 170 34.1
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 3.7e-08 64.3 46 63.0
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.1e-07 61.2 207 30.0
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 5.3e-07 60.5 66 50.0
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 5.3e-07 60.5 350 25.7
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 9.1e-07 59.7 150 35.3
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 1.2e-06 59.3 59 45.8
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 1.2e-06 59.3 100 45.0
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.6e-06 58.9 65 44.6
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.0e-06 58.5 78 50.0
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 2.7e-06 58.2 46 52.2
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.7e-06 56.6 87 42.5


User provided reference genes

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