Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 3.8e-75 284.6 135 100.0
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 2.0e-63 245.7 135 85.9
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 7.5e-63 243.8 135 85.2
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.6e-57 226.1 133 80.5
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.1e-56 221.9 135 78.5
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 9.8e-47 190.3 133 67.7
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 4.1e-45 184.9 133 68.4
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 5.4e-45 184.5 133 66.9
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 7.1e-45 184.1 133 68.4
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.2e-44 183.3 133 68.4
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 6.0e-44 181.0 133 65.4
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 8.1e-41 170.6 133 59.4
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.2e-36 156.8 125 59.2
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.9e-34 149.4 125 54.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.9e-34 149.4 132 53.0
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.3e-34 148.7 132 53.8
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.6e-33 146.4 136 54.4
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 8.1e-33 144.1 133 54.1
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 8.1e-33 144.1 133 53.4
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 4.0e-32 141.7 132 53.8
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 6.9e-32 141.0 133 54.9
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 4.4e-31 138.3 116 56.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 4.4e-31 138.3 141 51.8
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 9.9e-31 137.1 132 52.3
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 1.3e-30 136.7 117 53.8
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 1.7e-30 136.3 116 56.0
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.2e-30 136.0 129 55.8
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 4.9e-30 134.8 135 49.6
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 1.1e-29 133.7 133 46.6
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.1e-29 133.7 134 50.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 2.4e-29 132.5 133 46.6
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.2e-29 132.1 132 48.5
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 7.1e-29 131.0 130 50.0
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 1.2e-28 130.2 127 50.4
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 2.7e-28 129.0 134 48.5
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 2.7e-28 129.0 116 51.7
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.5e-28 128.6 127 50.4
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 3.5e-28 128.6 127 50.4
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 6.0e-28 127.9 134 47.8
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.3e-27 126.7 127 50.4
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 1.7e-27 126.3 128 53.1
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 2.3e-27 125.9 132 49.2
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 3.0e-27 125.6 132 47.0
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 3.0e-27 125.6 116 48.3
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 3.9e-27 125.2 115 51.3
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 5.1e-27 124.8 117 53.0
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.1e-26 123.6 128 49.2
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 2.5e-26 122.5 115 53.0
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 3.3e-26 122.1 132 45.5
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 5.6e-26 121.3 132 47.7
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 5.6e-26 121.3 135 49.6
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 7.3e-26 120.9 115 50.4
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 9.6e-26 120.6 132 46.2
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 1.3e-25 120.2 115 52.2
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.3e-25 120.2 115 52.2
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.6e-25 119.8 132 43.2
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.1e-25 119.4 134 44.0
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 2.1e-25 119.4 115 51.3
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 2.1e-25 119.4 115 51.3
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.6e-25 118.6 115 50.4
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.6e-25 118.6 115 50.4
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 3.6e-25 118.6 124 46.8
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 4.8e-25 118.2 145 44.1
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 6.2e-25 117.9 132 46.2
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 8.1e-25 117.5 115 50.4
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.1e-24 117.1 134 45.5
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.1e-24 117.1 134 47.0
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.8e-24 116.3 121 47.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 4.0e-24 115.2 133 45.1
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 5.3e-24 114.8 117 49.6
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 9.0e-24 114.0 135 43.7
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 9.0e-24 114.0 120 47.5
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 9.0e-24 114.0 137 44.5
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.2e-23 113.6 127 48.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 2.0e-23 112.8 116 45.7
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 2.0e-23 112.8 132 42.4
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.6e-23 112.5 134 42.5
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.6e-23 112.5 118 48.3
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 2.6e-23 112.5 176 38.1
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 5.8e-23 111.3 118 47.5
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 5.8e-23 111.3 128 43.8
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 5.8e-23 111.3 135 42.2
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 1.3e-22 110.2 118 46.6
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 2.9e-22 109.0 133 42.1
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 1.4e-21 106.7 127 41.7
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 1.9e-21 106.3 133 39.8
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 5.4e-21 104.8 119 43.7
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 5.4e-21 104.8 116 44.8
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.7e-20 102.4 130 42.3
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.0e-19 100.5 119 42.9
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 1.3e-19 100.1 113 45.1
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 1.8e-19 99.8 111 44.1
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 2.3e-19 99.4 116 38.8
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 2.3e-19 99.4 132 40.2
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 3.0e-19 99.0 117 42.7
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 3.9e-19 98.6 111 44.1
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 8.7e-19 97.4 121 45.5
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 8.7e-19 97.4 121 45.5
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.9e-18 96.3 146 38.4
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 3.6e-17 92.0 116 42.2
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.4e-16 90.1 121 40.5
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 1.4e-16 90.1 106 46.2
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.5e-15 86.7 131 39.7
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 4.9e-14 81.6 66 51.5
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 6.4e-14 81.3 106 35.8
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 3.3e-10 68.9 72 44.4
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 4.3e-10 68.6 62 40.3
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 1.1e-08 63.9 72 43.1
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.2e-07 60.5 53 49.1
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.6e-07 59.3 52 55.8
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 3.4e-07 58.9 53 49.1
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 3.8e-06 55.5 54 48.1
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 8.4e-06 54.3 58 43.1


User provided reference genes

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