Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g025880 Solanum pennellii HOM05D002295 ORTHO05D002354 2.8e-41 171.4 79 100.0
Solyc03g113490.3 Solanum lycopersicum HOM05D002295 ORTHO05D002789 1.8e-11 72.4 47 78.7
Sopen03g032540 Solanum pennellii HOM05D002295 ORTHO05D002789 3.9e-11 71.2 47 76.6
Nitab4.5_0000642g0040 Nicotiana tabacum HOM05D002295 ORTHO05D002789 6.7e-11 70.5 47 74.5
PGSC0003DMG400024459 Solanum tuberosum HOM05D002295 ORTHO05D002789 8.7e-11 70.1 47 76.6
CAN.G999.19 Capsicum annuum HOM05D002295 ORTHO05D002789 1.5e-10 69.3 47 74.5
Dinv07978 Davidia involucrata HOM05D002295 ORTHO05D002789 7.4e-10 67.0 51 62.7
Nitab4.5_0011826g0010 Nicotiana tabacum HOM05D002295 ORTHO05D002789 9.6e-10 66.6 47 70.2
Peaxi162Scf00009g00061 Petunia axillaris HOM05D002295 ORTHO05D002789 2.1e-09 65.5 47 68.1
Solyc06g071150.4 Solanum lycopersicum HOM05D002295 ORTHO05D002789 2.1e-09 65.5 42 76.2
Sopen06g027450 Solanum pennellii HOM05D002295 ORTHO05D002789 2.1e-09 65.5 42 76.2
PGSC0003DMG400033065 Solanum tuberosum HOM05D002295 ORTHO05D002789 2.8e-09 65.1 42 76.2
Nitab4.5_0000003g0070 Nicotiana tabacum HOM05D002295 ORTHO05D002789 6.2e-09 63.9 42 73.8
Peaxi162Scf00689g00549 Petunia axillaris HOM05D002295 ORTHO05D002789 6.2e-09 63.9 43 72.1
CAN.G628.54 Capsicum annuum HOM05D002295 ORTHO05D002789 1.8e-08 62.4 42 73.8
Nitab4.5_0000758g0010 Nicotiana tabacum HOM05D002295 ORTHO05D002789 1.8e-08 62.4 42 71.4
Lj1g0016837 Lotus japonicus HOM05D002295 ORTHO05D002789 4.0e-08 61.2 42 69.0
arahy.Tifrunner.gnm1.ann1.BF3ACX Arachis hypogaea HOM05D002295 ORTHO05D002789 6.9e-08 60.5 40 70.0
arahy.Tifrunner.gnm1.ann1.SDK6DE Arachis hypogaea HOM05D002295 ORTHO05D002789 6.9e-08 60.5 40 70.0
PSO591G0385 Papaver somniferum HOM05D002295 ORTHO05D002789 6.9e-08 60.5 41 70.7
CANSAT80G0541 Cannabis sativa HOM05D002295 ORTHO05D002789 9.0e-08 60.1 42 66.7
Cc04_g15990 Coffea canephora HOM05D002295 ORTHO05D002789 1.2e-07 59.7 43 67.4
Thhalv10018212m.g Eutrema salsugineum HOM05D002295 ORTHO05D002789 1.2e-07 59.7 37 73.0
Lsat_1_v5_gn_1_11461 Lactuca sativa HOM05D002295 ORTHO05D002789 1.5e-07 59.3 43 67.4
Phvul.003G194600 Phaseolus vulgaris HOM05D002295 ORTHO05D002789 1.5e-07 59.3 42 66.7
GSVIVG01008086001 Vitis vinifera HOM05D002295 ORTHO05D002789 1.5e-07 59.3 42 66.7
MBI01_g01222_MAGBIO Magnolia biondii HOM05D002295 ORTHO05D002789 2.0e-07 58.9 42 64.3
CSS0039060 Camellia sinensis var. sinensis HOM05D002295 ORTHO05D002789 2.6e-07 58.5 43 62.8
CSS0047574 Camellia sinensis var. sinensis HOM05D002295 ORTHO05D002789 2.6e-07 58.5 43 62.8
Glyma.06G188900 Glycine max HOM05D002295 ORTHO05D002789 2.6e-07 58.5 37 73.0
Oeu020372.1 Olea europaea HOM05D002295 ORTHO05D018402 2.6e-07 58.5 40 67.5
PGR083G2800 Punica granatum HOM05D002295 ORTHO05D002789 2.6e-07 58.5 42 66.7
QL10p014630 Quercus lobata HOM05D002295 ORTHO05D002789 2.6e-07 58.5 40 67.5
SGA_v2.0_scaffold56G20074 Striga asiatica HOM05D002295 ORTHO05D002789 2.6e-07 58.5 40 65.0
arahy.Tifrunner.gnm1.ann1.0825KH Arachis hypogaea HOM05D002295 ORTHO05D002789 3.4e-07 58.2 42 64.3
CDE07G1149 Ceratophyllum demersum HOM05D002295 ORTHO05D002789 3.4e-07 58.2 43 62.8
AUR62021763 Chenopodium quinoa HOM05D002295 ORTHO05D002789 3.4e-07 58.2 42 69.0
Lsat_1_v5_gn_4_105600 Lactuca sativa HOM05D002295 ORTHO05D002789 3.4e-07 58.2 48 58.3
MBI04_g18039_MAGBIO Magnolia biondii HOM05D002295 ORTHO05D002789 3.4e-07 58.2 42 66.7
Medtr4g107400 Medicago truncatula HOM05D002295 ORTHO05D002789 3.4e-07 58.2 39 69.2
Phvul.009G184100 Phaseolus vulgaris HOM05D002295 ORTHO05D002789 3.4e-07 58.2 40 67.5
ECA247G1025 Erigeron canadensis HOM05D002295 ORTHO05D002789 4.5e-07 57.8 43 62.8
HanXRQChr09g0271411 Helianthus annuus HOM05D002295 ORTHO05D002789 4.5e-07 57.8 47 61.7
Hma1.2p1_0002F.1_g003440 Hydrangea macrophylla HOM05D002295 ORTHO05D002789 4.5e-07 57.8 42 66.7
BcaC08g46903 Brassica carinata HOM05D002295 ORTHO05D002789 5.8e-07 57.4 37 67.6
BcaC08g46916 Brassica carinata HOM05D002295 ORTHO05D002789 5.8e-07 57.4 37 67.6
A07p40450 Brassica napus HOM05D002295 ORTHO05D002789 5.8e-07 57.4 37 67.6
C06p48820 Brassica napus HOM05D002295 ORTHO05D002789 5.8e-07 57.4 37 67.6
BraA07t31588Z Brassica rapa HOM05D002295 ORTHO05D002789 5.8e-07 57.4 37 67.6
DCAR_031069 Daucus carota HOM05D002295 ORTHO05D002789 5.8e-07 57.4 44 61.4
ECA232G3772 Erigeron canadensis HOM05D002295 ORTHO05D002789 5.8e-07 57.4 47 61.7
Sp5g29900 Schrenkiella parvula HOM05D002295 ORTHO05D002789 5.8e-07 57.4 37 67.6
TWI81G0478 Tripterygium wilfordii HOM05D002295 ORTHO05D002789 5.8e-07 57.4 42 61.9
VMungo1309G0931 Vigna mungo HOM05D002295 ORTHO05D002789 5.8e-07 57.4 40 65.0
AL2G34670 Arabidopsis lyrata HOM05D002295 ORTHO05D002789 7.6e-07 57.0 37 64.9
AT1G74790 Arabidopsis thaliana HOM05D002295 ORTHO05D002789 7.6e-07 57.0 37 64.9
Glyma.04G176400 Glycine max HOM05D002295 ORTHO05D002789 7.6e-07 57.0 35 71.4
HanXRQChr02g0045391 Helianthus annuus HOM05D002295 ORTHO05D002789 7.6e-07 57.0 43 62.8
BcaC08g46945 Brassica carinata HOM05D002295 ORTHO05D002789 9.9e-07 56.6 37 64.9
BolC6t39918H Brassica oleracea HOM05D002295 ORTHO05D002789 9.9e-07 56.6 40 62.5
ClCG01G014300 Citrullus lanatus HOM05D002295 ORTHO05D002789 9.9e-07 56.6 40 62.5
Sc14g0008430 Simmondsia chinensis HOM05D002295 ORTHO05D002789 9.9e-07 56.6 43 58.1
CARHR068090 Cardamine hirsuta HOM05D002295 ORTHO05D002789 1.3e-06 56.2 37 67.6
CsaV3_1G008020 Cucumis sativus L. HOM05D002295 ORTHO05D002789 1.3e-06 56.2 40 62.5
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.3e-06 56.2 42 61.9
Hma1.2p1_3047F.1_g332120 Hydrangea macrophylla HOM05D002295 ORTHO05D002789 1.3e-06 56.2 35 74.3
Lj4g0027714 Lotus japonicus HOM05D002295 ORTHO05D002789 1.3e-06 56.2 42 64.3
SalBow5G4093 Salvia bowleyana HOM05D002295 ORTHO05D002789 1.3e-06 56.2 40 65.0
Hund02683 Selenicereus undatus HOM05D002295 ORTHO05D002789 1.3e-06 56.2 42 66.7
Hund25286 Selenicereus undatus HOM05D002295 ORTHO05D002789 1.3e-06 56.2 41 58.5
TAR374G1104 Trochodendron aralioides HOM05D002295 ORTHO05D002789 1.3e-06 56.2 42 64.3
Actinidia04937 Actinidia chinensis HOM05D002222 ORTHO05D002354 1.7e-06 55.8 46 60.9
Cfa019020 Carpinus fangiana HOM05D002295 ORTHO05D002789 1.7e-06 55.8 43 60.5
FvH4_5g15850 Fragaria vesca HOM05D002295 ORTHO05D002789 1.7e-06 55.8 42 59.5
FAN04G2568 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.7e-06 55.8 42 59.5
FAN13G1389 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.7e-06 55.8 42 59.5
FAN18G2218 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.7e-06 55.8 42 59.5
Hma1.2p1_0104F.1_g050440 Hydrangea macrophylla HOM05D002295 ORTHO05D002789 1.7e-06 55.8 35 71.4
Rhsim08G0162200 Rhododendron simsii HOM05D002295 ORTHO05D002789 1.7e-06 55.8 42 61.9
SalBow8G1674 Salvia bowleyana HOM05D002295 ORTHO05D002789 1.7e-06 55.8 40 65.0
arahy.Tifrunner.gnm1.ann1.R3R9R8 Arachis hypogaea HOM05D002295 ORTHO05D002789 2.2e-06 55.5 40 60.0
Ca_21862_v3 Cicer arietinum L. HOM05D002295 ORTHO05D002789 2.2e-06 55.5 42 61.9
MELO3C002219.2 Cucumis melo HOM05D002295 ORTHO05D002789 2.2e-06 55.5 40 62.5
Lj6A796T83 Lonicera japonica HOM05D002295 ORTHO05D002789 2.2e-06 55.5 42 61.9
QL03p066489 Quercus lobata HOM05D002295 ORTHO05D002789 2.2e-06 55.5 46 54.3
BolC6t39917H Brassica oleracea HOM05D002295 ORTHO05D018402 2.9e-06 55.1 37 64.9
Prupe.5G184000 Prunus persica HOM05D002295 ORTHO05D002789 2.9e-06 55.1 39 64.1
RcHm_v2.0_Chr7g0180251 Rosa chinensis HOM05D002295 ORTHO05D002789 2.9e-06 55.1 42 59.5
MSTRG.7840 Avicennia marina HOM05D002295 ORTHO05D002789 3.8e-06 54.7 43 62.8
Carub.0002s2157 Capsella rubella HOM05D002295 ORTHO05D002789 3.8e-06 54.7 37 62.2
MD06G1185200 Malus domestica HOM05D002295 ORTHO05D002789 3.8e-06 54.7 39 64.1
Manes.14G073300 Manihot esculenta HOM05D002295 ORTHO05D002789 3.8e-06 54.7 44 59.1
Aa31LG11G1010 Aethionema arabicum HOM05D002295 ORTHO05D002789 4.9e-06 54.3 35 68.6
ATR0001G053 Amborella trichopoda HOM05D002295 ORTHO05D002789 4.9e-06 54.3 42 61.9
MSTRG.659 Avicennia marina HOM05D002295 ORTHO05D002789 4.9e-06 54.3 42 61.9
EL10Ac6g13123 Beta vulgaris HOM05D002295 ORTHO05D002789 4.9e-06 54.3 40 62.5
Gohir.A03G075700 Gossypium hirsutum HOM05D002295 ORTHO05D002789 4.9e-06 54.3 42 61.9
Gohir.D03G090300 Gossypium hirsutum HOM05D002295 ORTHO05D002789 4.9e-06 54.3 42 61.9
Gorai.003G071100 Gossypium raimondii HOM05D002295 ORTHO05D002789 4.9e-06 54.3 42 61.9
Sopen12g014550 Solanum pennellii HOM05D002295 ORTHO05D002789 4.9e-06 54.3 47 55.3
PGSC0003DMG400015728 Solanum tuberosum HOM05D002295 ORTHO05D002789 4.9e-06 54.3 47 55.3
EL10Ac5g10904 Beta vulgaris HOM05D002295 ORTHO05D002789 6.4e-06 53.9 35 74.3
A07p20160 Brassica napus HOM05D002295 ORTHO05D002789 6.4e-06 53.9 36 63.9
BraA07t29715Z Brassica rapa HOM05D002295 ORTHO05D002789 6.4e-06 53.9 36 63.9
CiPaw.05G142200 Carya illinoinensis HOM05D002295 ORTHO05D002789 6.4e-06 53.9 40 60.0
Ciclev10011199m.g Citrus clementina HOM05D002295 ORTHO05D002789 6.4e-06 53.9 43 58.1
COL.COLO4_33413 Corchorus olitorius HOM05D002295 ORTHO05D002789 6.4e-06 53.9 40 62.5
Eucgr.B00393 Eucalyptus grandis HOM05D002295 ORTHO05D002789 6.4e-06 53.9 42 57.1
Hma1.2p1_0289F.1_g114290 Hydrangea macrophylla HOM05D002295 ORTHO05D002789 6.4e-06 53.9 42 59.5
Psat4g054360 Pisum sativum HOM05D002295 ORTHO05D002789 6.4e-06 53.9 43 60.5
Sabra15G0091900 Salix brachista HOM05D002295 ORTHO05D002789 6.4e-06 53.9 42 61.9
unitig_26.g10319 Utricularia gibba HOM05D002295 ORTHO05D002789 6.4e-06 53.9 43 58.1
CiPaw.11G035900 Carya illinoinensis HOM05D002295 ORTHO05D002789 8.4e-06 53.5 43 55.8
Haze_14593 Corylus avellana HOM05D002295 ORTHO05D002789 8.4e-06 53.5 39 64.1
DCAR_031283 Daucus carota HOM05D002295 ORTHO05D002789 8.4e-06 53.5 43 60.5
Potri.015G067200 Populus trichocarpa HOM05D002295 ORTHO05D002789 8.4e-06 53.5 40 62.5
Prupe.3G273500 Prunus persica HOM05D002295 ORTHO05D002789 8.4e-06 53.5 40 57.5
RcHm_v2.0_Chr7g0180271 Rosa chinensis HOM05D002295 ORTHO05D018402 8.4e-06 53.5 47 51.1


User provided reference genes

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