Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.0e-179 633.3 315 100.0
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 2.4e-176 622.1 315 98.4
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 2.1e-172 609.0 315 95.9
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.9e-147 525.0 319 82.1
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.1e-147 524.6 319 81.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 8.8e-147 523.9 319 81.8
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.6e-140 503.1 316 79.7
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 2.2e-134 482.6 317 73.8
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 2.5e-133 479.2 318 73.3
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.7e-132 475.7 315 75.9
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.0e-131 472.2 315 73.0
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.0e-131 471.9 315 72.7
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 5.2e-131 471.5 316 74.4
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 6.7e-131 471.1 322 72.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 6.7e-131 471.1 322 72.0
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 8.8e-131 470.7 320 71.9
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.2e-130 470.3 311 74.0
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.5e-130 469.9 318 72.3
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.0e-130 469.5 323 70.0
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 4.4e-130 468.4 316 71.5
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 7.5e-130 467.6 322 71.7
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 9.7e-130 467.2 320 71.9
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 2.2e-129 466.1 318 71.7
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.2e-129 466.1 330 70.9
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.1e-128 463.8 318 71.1
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.8e-128 463.0 304 76.3
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 2.4e-128 462.6 315 73.0
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.6e-127 459.9 318 73.3
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.6e-127 459.9 312 70.5
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.6e-127 459.9 315 71.4
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.6e-127 459.9 303 73.6
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.6e-127 459.9 316 72.2
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 2.7e-127 459.1 298 74.2
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.7e-127 459.1 318 70.8
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 4.5e-127 458.4 313 69.6
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 5.9e-127 458.0 319 71.5
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.3e-126 456.8 320 70.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.7e-126 456.4 328 68.6
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 2.9e-126 455.7 315 71.4
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 3.8e-126 455.3 310 71.3
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 8.5e-126 454.1 315 72.1
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.5e-125 453.4 316 70.3
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-125 453.0 314 69.7
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.9e-125 453.0 312 71.5
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.9e-125 453.0 314 71.7
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.2e-125 452.2 310 69.7
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 5.5e-125 451.4 314 71.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 9.4e-125 450.7 314 70.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-124 450.3 312 71.5
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.6e-124 448.7 315 69.2
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 4.7e-124 448.4 312 70.8
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 4.7e-124 448.4 317 70.3
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 8.0e-124 447.6 315 69.2
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.0e-123 447.2 305 71.5
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.2e-122 443.7 316 71.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 7.5e-122 441.0 319 70.2
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 9.8e-122 440.7 307 70.4
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.7e-121 439.9 315 70.2
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 2.8e-121 439.1 315 69.8
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.1e-120 437.2 314 67.2
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.8e-120 436.4 320 70.6
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 3.1e-120 435.6 312 68.3
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 7.0e-120 434.5 314 69.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.2e-119 433.7 321 70.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.2e-119 433.7 315 69.5
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.6e-119 433.3 314 66.6
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.7e-119 432.6 317 67.5
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.7e-119 432.6 322 66.1
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.0e-118 430.6 314 68.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 5.0e-118 428.3 315 68.3
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 6.5e-118 427.9 311 66.9
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 6.5e-118 427.9 315 69.5
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.5e-117 426.0 315 66.3
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.2e-117 425.6 317 66.2
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 9.5e-117 424.1 342 63.5
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.2e-116 423.7 282 73.0
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 2.1e-116 422.9 312 66.7
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.8e-116 422.5 312 66.3
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 8.0e-116 421.0 317 65.6
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.6e-114 416.0 316 64.2
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 2.6e-114 416.0 319 65.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 4.4e-114 415.2 319 65.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.3e-113 413.7 324 64.2
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.8e-113 412.5 319 64.6
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.8e-112 409.8 334 62.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 3.1e-112 409.1 309 66.7
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.0e-111 406.4 317 63.4
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 5.9e-111 404.8 312 63.5
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 7.8e-111 404.4 311 63.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.3e-105 387.1 331 57.7
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.8e-104 383.3 317 62.1
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 2.0e-103 379.8 313 61.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 8.9e-99 364.4 377 53.1
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.0e-98 363.2 283 64.3
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.4e-98 362.5 318 59.7
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 4.4e-98 362.1 279 64.9
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 2.4e-96 356.3 305 58.4
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 5.4e-96 355.1 303 60.7
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.0e-95 351.7 307 56.4
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.0e-94 350.9 305 55.7
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.0e-94 348.6 227 74.9
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.1e-93 347.4 305 55.7
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.9e-93 346.7 305 56.4
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.6e-92 342.4 233 71.2
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.9e-85 320.1 281 60.5
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.6e-82 309.7 233 67.0
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 6.4e-81 305.1 351 48.4
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.5e-74 283.9 235 60.4
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.7e-71 273.1 197 65.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.1e-69 267.7 339 45.7
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 3.1e-67 259.6 190 64.2
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.1e-67 259.6 187 68.4
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 9.3e-64 248.1 208 62.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.1e-52 210.3 220 50.0
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 4.9e-49 199.1 156 64.1
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.1e-47 193.7 234 50.4
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.3e-46 191.0 161 61.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.5e-45 186.8 290 39.7
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.9e-43 178.7 211 52.1
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 3.8e-41 172.9 127 66.9
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.1e-35 152.9 296 36.5
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.9e-32 144.1 124 60.5
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.4e-30 137.9 307 34.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.5e-26 124.4 121 57.9
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 8.5e-25 118.6 120 54.2
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 2.3e-22 110.5 169 45.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 6.7e-22 109.0 116 51.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-21 107.5 121 51.2
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.7e-21 105.9 83 60.2
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.2e-20 104.0 75 66.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.7e-20 103.2 150 39.3
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.0e-18 97.4 66 68.2
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.9e-17 93.6 76 61.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.8e-17 93.2 70 62.9
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.5e-16 91.3 62 72.6
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.0e-14 83.6 89 48.3
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 7.5e-13 79.0 81 54.3
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 3.1e-11 73.6 83 48.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.7e-10 70.5 60 56.7
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 1.4e-06 58.2 54 55.6
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 2.3e-06 57.4 44 70.5


User provided reference genes

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