Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g024570 Solanum pennellii HOM05D002565 ORTHO05D002771 1.1e-62 243.0 116 100.0
Sopen09g024380 Solanum pennellii HOM05D002565 ORTHO05D002771 2.2e-47 192.2 100 90.0
Sopen09g024550 Solanum pennellii HOM05D002565 ORTHO05D002771 6.1e-45 184.1 100 88.0
Sopen09g024530 Solanum pennellii HOM05D002565 ORTHO05D002771 1.1e-43 179.9 100 87.0
Sopen09g024370 Solanum pennellii HOM05D002565 ORTHO05D002771 1.7e-42 176.0 100 86.0
Solyc09g061510.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 2.2e-39 165.6 91 84.6
PGSC0003DMG400029244 Solanum tuberosum HOM05D002565 ORTHO05D002771 1.7e-34 149.4 100 77.0
Sopen09g024190 Solanum pennellii HOM05D002565 ORTHO05D002771 1.4e-33 146.4 78 89.7
PGSC0003DMG400016305 Solanum tuberosum HOM05D002565 ORTHO05D002771 1.0e-31 140.2 100 68.0
Sopen06g019300 Solanum pennellii HOM05D002565 ORTHO05D002771 3.8e-31 138.3 100 68.0
Sopen06g019330 Solanum pennellii HOM05D002565 ORTHO05D002771 2.3e-28 129.0 91 71.4
Solyc06g054150.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 3.9e-28 128.3 100 65.0
Solyc09g061350.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 4.4e-27 124.8 72 80.6
Peaxi162Scf00192g00114 Petunia axillaris HOM05D002565 ORTHO05D002771 1.4e-17 93.2 95 60.0
Nitab4.5_0001920g0030 Nicotiana tabacum HOM05D002565 ORTHO05D002771 1.7e-15 86.3 102 52.0
Nitab4.5_0028601g0010 Nicotiana tabacum HOM05D002565 ORTHO05D002771 2.2e-15 85.9 110 50.0
Solyc09g082150.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 6.5e-15 84.3 93 55.9
Sopen09g031030 Solanum pennellii HOM05D002565 ORTHO05D002771 1.1e-14 83.6 93 54.8
PGSC0003DMG400032275 Solanum tuberosum HOM05D002565 ORTHO05D002771 2.5e-14 82.4 93 55.9
Cc03_g03910 Coffea canephora HOM05D002565 ORTHO05D002771 1.2e-13 80.1 103 52.4
arahy.Tifrunner.gnm1.ann1.S2KCIC Arachis hypogaea HOM05D002565 ORTHO05D002771 1.6e-13 79.7 102 48.0
Nitab4.5_0014926g0010 Nicotiana tabacum HOM05D002565 ORTHO05D002771 2.1e-13 79.3 95 53.7
PGSC0003DMG400013433 Solanum tuberosum HOM05D002565 ORTHO05D002771 2.1e-13 79.3 86 52.3
Peaxi162Scf00092g00064 Petunia axillaris HOM05D002565 ORTHO05D002771 2.7e-13 79.0 97 51.5
Nitab4.5_0000559g0020 Nicotiana tabacum HOM05D002565 ORTHO05D002771 6.1e-13 77.8 97 53.6
Glyma.20G147400 Glycine max HOM05D002565 ORTHO05D002771 1.4e-12 76.6 87 52.9
Phvul.007G058000 Phaseolus vulgaris HOM05D002565 ORTHO05D002771 1.4e-12 76.6 96 50.0
FAN22G1388 Fragaria x ananassa HOM05D002565 ORTHO05D002771 2.3e-12 75.9 99 50.5
MD13G1194500 Malus domestica HOM05D002565 ORTHO05D002771 3.0e-12 75.5 92 53.3
Psat6g206880 Pisum sativum HOM05D002565 ORTHO05D002771 3.0e-12 75.5 89 50.6
Dinv14002 Davidia involucrata HOM05D002565 ORTHO05D002771 5.2e-12 74.7 89 52.8
Glyma.10G247400 Glycine max HOM05D002565 ORTHO05D002771 5.2e-12 74.7 83 54.2
FvH4_4g16300 Fragaria vesca HOM05D002565 ORTHO05D002771 6.8e-12 74.3 99 50.5
FAN07G2564 Fragaria x ananassa HOM05D002565 ORTHO05D002771 6.8e-12 74.3 99 50.5
FAN12G0739 Fragaria x ananassa HOM05D002565 ORTHO05D002771 6.8e-12 74.3 99 50.5
Sopen03g001210 Solanum pennellii HOM05D002565 ORTHO05D002771 6.8e-12 74.3 82 51.2
Lj6P607T19 Lonicera japonica HOM05D002565 ORTHO05D002771 8.8e-12 73.9 81 54.3
Ciclev10006449m.g Citrus clementina HOM05D002565 ORTHO05D002771 1.2e-11 73.6 100 48.0
CiPaw.02G097900 Carya illinoinensis HOM05D002565 ORTHO05D002771 1.5e-11 73.2 97 47.4
VMungo0720G0151 Vigna mungo HOM05D002565 ORTHO05D002771 1.5e-11 73.2 96 49.0
FAN17G2015 Fragaria x ananassa HOM05D002565 ORTHO05D002771 2.6e-11 72.4 98 48.0
Medtr1g103570 Medicago truncatula HOM05D002565 ORTHO05D002771 2.6e-11 72.4 72 56.9
Rhsim04G0201700 Rhododendron simsii HOM05D002565 ORTHO05D002771 3.4e-11 72.0 91 52.7
Manes.03G177300 Manihot esculenta HOM05D002565 ORTHO05D002771 4.4e-11 71.6 90 48.9
QL06p002108 Quercus lobata HOM05D002565 ORTHO05D002771 4.4e-11 71.6 79 53.2
Lj5g0011888 Lotus japonicus HOM05D002565 ORTHO05D002771 5.7e-11 71.2 72 55.6
Prupe.1G015400 Prunus persica HOM05D002565 ORTHO05D002771 5.7e-11 71.2 92 51.1
vmacro02590 Vaccinium macrocarpon HOM05D002565 ORTHO05D002771 7.5e-11 70.9 96 44.8
Peaxi162Scf00402g00042 Petunia axillaris HOM05D002565 ORTHO05D002771 9.8e-11 70.5 84 53.6
CANSAT78G2523 Cannabis sativa HOM05D002565 ORTHO05D002771 1.7e-10 69.7 107 44.9
CsaV3_3G013240 Cucumis sativus L. HOM05D002565 ORTHO05D002771 1.7e-10 69.7 93 47.3
Dinv44543 Davidia involucrata HOM05D002565 ORTHO05D002771 1.7e-10 69.7 98 50.0
TAR633G1375 Trochodendron aralioides HOM05D002565 ORTHO05D002771 2.2e-10 69.3 100 42.0
TAR636G1095 Trochodendron aralioides HOM05D002565 ORTHO05D002771 2.8e-10 68.9 103 39.8
GSVIVG01017994001 Vitis vinifera HOM05D002565 ORTHO05D002771 3.7e-10 68.6 74 52.7
Sed0011212 Sechium edule HOM05D002565 ORTHO05D002771 4.8e-10 68.2 92 44.6
EL10Ac5g10545 Beta vulgaris HOM05D002565 ORTHO05D002771 6.3e-10 67.8 108 38.9
Sed0013199 Sechium edule HOM05D002565 ORTHO05D002771 6.3e-10 67.8 92 43.5
AUR62032328 Chenopodium quinoa HOM05D002565 ORTHO05D002771 1.1e-09 67.0 84 44.0
Manes.15G029800 Manihot esculenta HOM05D002565 ORTHO05D002771 1.1e-09 67.0 86 47.7
AL3G36840 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 1.4e-09 66.6 72 52.8
MELO3C006527.2 Cucumis melo HOM05D002565 ORTHO05D002771 1.4e-09 66.6 90 45.6
Sopen06g019320 Solanum pennellii HOM05D002565 ORTHO05D002771 1.4e-09 66.6 49 67.3
HPP92_009612 Vanilla planifolia HOM05D002565 ORTHO05D002771 1.4e-09 66.6 75 48.0
Atru.chr4.2450 Acer truncatum HOM05D002565 ORTHO05D002771 1.8e-09 66.2 77 51.9
Atru.ctg752_3.65 Acer truncatum HOM05D002565 ORTHO05D002771 1.8e-09 66.2 77 51.9
Actinidia21125 Actinidia chinensis HOM05D002565 ORTHO05D002771 1.8e-09 66.2 83 48.2
Haze_00886 Corylus avellana HOM05D002565 ORTHO05D002771 2.4e-09 65.9 77 54.5
Nitab4.5_0000321g0120 Nicotiana tabacum HOM05D002565 ORTHO05D002771 2.4e-09 65.9 58 55.2
Solyc09g065370.3 Solanum lycopersicum HOM05D002565 ORTHO05D002771 2.4e-09 65.9 108 38.9
Sopen09g027140 Solanum pennellii HOM05D002565 ORTHO05D002771 2.4e-09 65.9 108 38.9
PGSC0003DMG400019327 Solanum tuberosum HOM05D002565 ORTHO05D002771 2.4e-09 65.9 108 38.9
Carub.0003s2269 Capsella rubella HOM05D002565 ORTHO05D002771 3.1e-09 65.5 72 52.8
CiPaw.01G167400 Carya illinoinensis HOM05D002565 ORTHO05D002771 3.1e-09 65.5 91 47.3
CSS0003268 Camellia sinensis var. sinensis HOM05D002565 ORTHO05D002771 4.1e-09 65.1 75 56.0
CSS0018267 Camellia sinensis var. sinensis HOM05D002565 ORTHO05D002771 4.1e-09 65.1 75 56.0
Actinidia23514 Actinidia chinensis HOM05D002565 ORTHO05D002771 5.4e-09 64.7 76 47.4
AT3G22530 Arabidopsis thaliana HOM05D002565 ORTHO05D002771 5.4e-09 64.7 72 51.4
Lsat_1_v5_gn_1_120560 Lactuca sativa HOM05D002565 ORTHO05D002771 5.4e-09 64.7 86 48.8
PGR004G1703 Punica granatum HOM05D002565 ORTHO05D002771 5.4e-09 64.7 85 47.1
AL3G32630 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 7.0e-09 64.3 71 52.1
DCAR_002724 Daucus carota HOM05D002565 ORTHO05D002771 7.0e-09 64.3 72 47.2
MELO3C012655.2 Cucumis melo HOM05D002565 ORTHO05D002771 9.1e-09 63.9 97 41.2
Sabra08G0117500 Salix brachista HOM05D002565 ORTHO05D002771 9.1e-09 63.9 77 49.4
AUR62028602 Chenopodium quinoa HOM05D002565 ORTHO05D002771 1.2e-08 63.5 84 41.7
BraA05t21499Z Brassica rapa HOM05D002565 ORTHO05D002771 1.6e-08 63.2 101 46.5
DCAR_024167 Daucus carota HOM05D002565 ORTHO05D002771 1.6e-08 63.2 68 52.9
HanXRQChr04g0107021 Helianthus annuus HOM05D002565 ORTHO05D002771 1.6e-08 63.2 70 51.4
Lalb_Chr21g0304731 Lupinus albus HOM05D002565 ORTHO05D002771 1.6e-08 63.2 72 51.4
MD16G1195400 Malus domestica HOM05D002565 ORTHO05D002771 2.0e-08 62.8 65 56.9
Nn1g02347 Nelumbo nucifera HOM05D002565 ORTHO05D002771 2.0e-08 62.8 102 39.2
Aqoxy5G00454 Aquilegia oxysepala HOM05D002565 ORTHO05D002771 2.7e-08 62.4 96 42.7
A05p26230 Brassica napus HOM05D002565 ORTHO05D002771 2.7e-08 62.4 101 46.5
Cc01_g19300 Coffea canephora HOM05D002565 ORTHO05D002771 2.7e-08 62.4 90 43.3
ECA247G2012 Erigeron canadensis HOM05D002565 ORTHO05D002771 2.7e-08 62.4 100 42.0
Lsat_1_v5_gn_9_22521 Lactuca sativa HOM05D002565 ORTHO05D002771 2.7e-08 62.4 70 55.7
Sp3g20290 Schrenkiella parvula HOM05D002565 ORTHO05D002771 2.7e-08 62.4 68 52.9
CSS0043004 Camellia sinensis var. sinensis HOM05D002565 ORTHO05D002771 3.5e-08 62.0 75 48.0
SGA_v2.0_scaffold1G00496 Striga asiatica HOM05D002565 ORTHO05D002771 3.5e-08 62.0 70 52.9
THA.LOC104822262 Tarenaya hassleriana HOM05D002565 ORTHO05D002771 3.5e-08 62.0 83 49.4
Duzib212G0905 Durio zibethinus HOM05D002565 ORTHO05D002771 4.5e-08 61.6 90 45.6
HanXRQChr15g0493281 Helianthus annuus HOM05D002565 ORTHO05D002771 4.5e-08 61.6 86 46.5
Lj1C48T10 Lonicera japonica HOM05D002565 ORTHO05D002771 4.5e-08 61.6 66 48.5
Lj2P1169T11 Lonicera japonica HOM05D002565 ORTHO05D002771 4.5e-08 61.6 87 40.2
CAN.G1549.9 Capsicum annuum HOM05D002565 ORTHO05D002771 5.9e-08 61.2 85 45.9
Duzib151G1058 Durio zibethinus HOM05D002565 ORTHO05D002771 5.9e-08 61.2 89 42.7
Actinidia00776 Actinidia chinensis HOM05D002565 ORTHO05D002771 7.7e-08 60.8 94 41.5
Duzib052G0131 Durio zibethinus HOM05D002565 ORTHO05D002771 7.7e-08 60.8 75 48.0
Migut.D00317 Erythranthe guttata HOM05D002565 ORTHO05D002771 7.7e-08 60.8 70 50.0
Migut.G00346 Erythranthe guttata HOM05D002565 ORTHO05D002771 7.7e-08 60.8 97 45.4
Medtr5g006400 Medicago truncatula HOM05D002565 ORTHO05D002771 7.7e-08 60.8 67 53.7
Nn6g34081 Nelumbo nucifera HOM05D002565 ORTHO05D002771 7.7e-08 60.8 84 44.0
Sabra10G0057300 Salix brachista HOM05D002565 ORTHO05D002771 7.7e-08 60.8 86 44.2
SHI00453 Sapria himalayana HOM05D002565 ORTHO05D002771 7.7e-08 60.8 90 46.7
Sp7g12980 Schrenkiella parvula HOM05D002565 ORTHO05D002771 7.7e-08 60.8 87 47.1
THA.LOC104808553 Tarenaya hassleriana HOM05D002565 ORTHO05D002771 7.7e-08 60.8 76 50.0
TAR362G0970 Trochodendron aralioides HOM05D002565 ORTHO05D002771 1.0e-07 60.5 84 44.0
Dinv34772 Davidia involucrata HOM05D002565 ORTHO05D002771 1.3e-07 60.1 84 42.9
Lj6C52T2 Lonicera japonica HOM05D002565 ORTHO05D002771 1.3e-07 60.1 64 50.0
Nitab4.5_0003617g0010 Nicotiana tabacum HOM05D002565 ORTHO05D002771 1.3e-07 60.1 79 44.3
Actinidia09120 Actinidia chinensis HOM05D002565 ORTHO05D002771 1.7e-07 59.7 92 41.3
ClCG06G006270 Citrullus lanatus HOM05D002565 ORTHO05D002771 2.3e-07 59.3 97 40.2
Sc17g0001360 Simmondsia chinensis HOM05D002565 ORTHO05D002771 2.3e-07 59.3 73 47.9
Thecc.04G233600 Theobroma cacao HOM05D002565 ORTHO05D002771 2.3e-07 59.3 89 42.7
COL.COLO4_21491 Corchorus olitorius HOM05D002565 ORTHO05D002771 2.9e-07 58.9 75 48.0
Migut.N02041 Erythranthe guttata HOM05D002565 ORTHO05D002771 2.9e-07 58.9 70 48.6
Oeu029466.1 Olea europaea HOM05D002565 ORTHO05D002771 2.9e-07 58.9 81 44.4
Potri.010G086400 Populus trichocarpa HOM05D002565 ORTHO05D002771 2.9e-07 58.9 68 51.5
Actinidia24905 Actinidia chinensis HOM05D002565 ORTHO05D002771 3.8e-07 58.5 67 47.8
CsaV3_7G022450 Cucumis sativus L. HOM05D002565 ORTHO05D002771 3.8e-07 58.5 88 39.8
Migut.O00515 Erythranthe guttata HOM05D002565 ORTHO05D002771 3.8e-07 58.5 70 48.6
Lsat_1_v5_gn_9_6400 Lactuca sativa HOM05D002565 ORTHO05D002771 3.8e-07 58.5 78 46.2
Potri.008G154100 Populus trichocarpa HOM05D002565 ORTHO05D002771 3.8e-07 58.5 71 49.3
Solyc06g084220.1 Solanum lycopersicum HOM05D002565 ORTHO05D002771 3.8e-07 58.5 86 43.0
Sopen06g035600 Solanum pennellii HOM05D002565 ORTHO05D002771 3.8e-07 58.5 86 43.0
Carub.0007s2728 Capsella rubella HOM05D002565 ORTHO05D002771 5.0e-07 58.2 82 47.6
Gohir.D09G218900 Gossypium hirsutum HOM05D002565 ORTHO05D002771 5.0e-07 58.2 86 44.2
Gorai.006G239900 Gossypium raimondii HOM05D002565 ORTHO05D002771 5.0e-07 58.2 86 44.2
Hma1.2p1_0822F.1_g224350 Hydrangea macrophylla HOM05D002565 ORTHO05D002771 5.0e-07 58.2 65 49.2
Nitab4.5_0004318g0080 Nicotiana tabacum HOM05D002565 ORTHO05D002771 5.0e-07 58.2 79 43.0
Rhsim13G0026500 Rhododendron simsii HOM05D002565 ORTHO05D002771 5.0e-07 58.2 91 44.0
AL7G41020 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 6.6e-07 57.8 84 45.2
BcaB06g26363 Brassica carinata HOM05D002565 ORTHO05D002771 6.6e-07 57.8 77 49.4
Eucgr.H03452 Eucalyptus grandis HOM05D002565 ORTHO05D002771 6.6e-07 57.8 75 53.3
Gohir.A09G216500 Gossypium hirsutum HOM05D002565 ORTHO05D002771 6.6e-07 57.8 86 44.2
Oeu058795.1 Olea europaea HOM05D002565 ORTHO05D002771 6.6e-07 57.8 81 44.4
PGSC0003DMG400020129 Solanum tuberosum HOM05D002565 ORTHO05D002771 6.6e-07 57.8 65 49.2
Glyma.01G237300 Glycine max HOM05D002565 ORTHO05D002771 8.6e-07 57.4 72 47.2
TPR.G38029 Trifolium pratense HOM05D002565 ORTHO05D002771 8.6e-07 57.4 69 50.7
AL862U10020 Arabidopsis lyrata HOM05D002565 ORTHO05D002771 1.1e-06 57.0 67 50.7
PSO210G5734 Papaver somniferum HOM05D002565 ORTHO05D002771 1.1e-06 57.0 63 52.4
PSO832G4376 Papaver somniferum HOM05D002565 ORTHO05D002771 1.1e-06 57.0 63 52.4
DCAR_012493 Daucus carota HOM05D002565 ORTHO05D002771 1.5e-06 56.6 105 41.0
SalBow2G2464 Salvia bowleyana HOM05D002565 ORTHO05D002771 1.5e-06 56.6 80 45.0
Dinv32915 Davidia involucrata HOM05D002565 ORTHO05D002771 1.9e-06 56.2 84 40.5
PSO210G4600 Papaver somniferum HOM05D002565 ORTHO05D002771 1.9e-06 56.2 79 39.2
THA.LOC104803032 Tarenaya hassleriana HOM05D002565 ORTHO05D002771 1.9e-06 56.2 96 45.8
TWI09G0462 Tripterygium wilfordii HOM05D002565 ORTHO05D002771 1.9e-06 56.2 69 47.8
AUR62025570 Chenopodium quinoa HOM05D002565 ORTHO05D002771 2.5e-06 55.8 77 40.3
BcaC05g28041 Brassica carinata HOM05D002565 ORTHO05D002771 3.3e-06 55.5 77 50.6
C05p40630 Brassica napus HOM05D002565 ORTHO05D002771 3.3e-06 55.5 77 50.6
BolC5t32802H Brassica oleracea HOM05D002565 ORTHO05D002771 3.3e-06 55.5 77 50.6
Os07g0173100 Oryza sativa ssp. japonica HOM05D002565 ORTHO05D002771 3.3e-06 55.5 62 48.4
TWI73G0527 Tripterygium wilfordii HOM05D002565 ORTHO05D002771 3.3e-06 55.5 66 50.0
Peaxi162Scf00207g01214 Petunia axillaris HOM05D002565 ORTHO05D002771 4.2e-06 55.1 91 40.7
MSTRG.18245 Avicennia marina HOM05D002565 ORTHO05D002771 5.5e-06 54.7 70 47.1
Gohir.D01G021800 Gossypium hirsutum HOM05D002565 ORTHO05D002771 5.5e-06 54.7 69 44.9
Gorai.002G024300 Gossypium raimondii HOM05D002565 ORTHO05D002771 5.5e-06 54.7 69 44.9
Rhsim01G0273600 Rhododendron simsii HOM05D002565 ORTHO05D002771 5.5e-06 54.7 65 47.7
Gohir.A01G023800 Gossypium hirsutum HOM05D002565 ORTHO05D002771 7.2e-06 54.3 70 45.7
HanXRQChr04g0118241 Helianthus annuus HOM05D002565 ORTHO05D002771 7.2e-06 54.3 78 48.7
Lsat_1_v5_gn_5_184300 Lactuca sativa HOM05D002565 ORTHO05D002771 7.2e-06 54.3 78 46.2
ATR0697G297 Amborella trichopoda HOM05D002565 ORTHO05D002771 9.5e-06 53.9 65 47.7
Nitab4.5_0000759g0240 Nicotiana tabacum HOM05D002565 ORTHO05D002771 9.5e-06 53.9 75 44.0


User provided reference genes

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