Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 0.0e+00 1472.2 744 100.0
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 2.0e-274 949.1 602 84.4
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.5e-216 755.0 606 69.1
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.4e-216 754.2 607 68.9
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.5e-176 624.0 608 59.0
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.2e-173 614.4 608 58.9
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 6.6e-169 598.6 605 57.2
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 5.4e-147 525.8 602 52.8
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 9.6e-144 515.0 608 49.0
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.8e-134 484.2 630 46.7
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 6.5e-132 475.7 608 46.5
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 2.3e-129 467.2 607 46.6
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 2.5e-128 463.8 609 45.8
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.0e-121 441.8 573 45.2
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.5e-120 438.0 609 45.2
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 5.3e-118 429.5 583 45.3
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 3.4e-117 426.8 610 43.0
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 2.9e-116 423.7 610 43.4
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 3.2e-115 420.2 612 43.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 7.2e-115 419.1 623 43.0
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.6e-114 417.9 607 43.0
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.7e-114 417.2 607 43.0
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 4.7e-114 416.4 616 43.3
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 6.1e-114 416.0 648 41.8
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.3e-113 414.1 608 42.9
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 2.0e-112 411.0 607 43.5
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 3.3e-112 410.2 610 43.1
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 2.8e-111 407.1 607 42.7
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 4.8e-111 406.4 590 43.9
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 3.1e-110 403.7 610 43.0
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 4.1e-110 403.3 589 42.8
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 5.3e-110 402.9 607 41.7
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.6e-109 400.6 583 43.2
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 2.9e-108 397.1 585 43.9
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.8e-108 396.7 615 41.5
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.1e-107 395.2 540 44.1
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.5e-107 394.8 533 45.4
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.5e-107 394.0 571 44.3
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 2.5e-107 394.0 535 43.6
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 2.1e-106 391.0 573 43.8
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.7e-106 390.6 586 43.9
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 6.7e-105 386.0 608 41.9
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.5e-104 384.8 612 41.7
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 3.3e-104 383.6 609 38.4
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 9.7e-104 382.1 535 43.4
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.1e-102 378.6 582 40.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 1.8e-102 377.9 534 44.2
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 2.7e-101 374.0 526 43.7
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 3.5e-101 373.6 531 41.6
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 7.7e-101 372.5 646 39.5
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-100 371.7 570 39.3
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.7e-100 371.3 534 42.9
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 2.2e-100 370.9 531 42.7
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 2.9e-100 370.5 533 43.0
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 2.9e-100 370.5 530 41.9
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 3.2e-99 367.1 528 42.0
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 5.5e-99 366.3 639 40.1
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 9.4e-99 365.5 568 40.1
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.2e-98 365.2 529 41.8
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 3.6e-98 363.6 570 41.6
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 4.7e-98 363.2 570 41.6
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 8.0e-98 362.5 570 41.2
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 3.0e-97 360.5 578 39.8
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 4.0e-97 360.1 491 44.4
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 1.2e-96 358.6 575 42.3
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.5e-96 358.2 596 39.8
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 3.4e-96 357.1 569 40.9
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 5.7e-96 356.3 535 42.2
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 7.5e-96 355.9 542 42.3
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 9.8e-96 355.5 571 41.7
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 9.8e-96 355.5 594 38.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 9.8e-96 355.5 570 39.5
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.2e-95 354.4 537 42.1
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 1.4e-94 351.7 571 42.0
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.8e-94 351.3 537 43.2
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 4.1e-94 350.1 541 42.7
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 4.1e-94 350.1 573 41.2
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 5.4e-94 349.7 537 42.3
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 5.4e-94 349.7 537 42.3
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.2e-93 348.6 538 41.8
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.2e-93 348.6 581 38.9
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 3.5e-93 347.1 537 42.6
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 7.7e-93 345.9 533 38.8
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 6.5e-92 342.8 570 40.7
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 6.1e-90 336.3 588 36.9
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.0e-89 335.5 535 40.9
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 1.0e-89 335.5 607 36.9
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 4.4e-88 330.1 615 35.0
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 7.5e-88 329.3 424 44.3
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 4.9e-87 326.6 585 35.7
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.7e-84 318.2 525 40.0
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.0e-81 308.9 632 33.2
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 6.6e-76 289.7 462 39.4
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.6e-74 285.0 544 35.1
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 2.1e-74 284.6 556 35.1
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 2.3e-73 281.2 489 37.2
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 6.4e-71 273.1 463 35.9
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.1e-70 272.3 529 34.0
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 1.6e-69 268.5 321 50.2
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.6e-68 263.1 395 41.3
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.3e-67 260.8 465 35.3
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.3e-63 248.8 292 50.7
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.6e-61 241.9 577 31.0
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 2.7e-45 188.0 277 42.2
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 7.3e-43 179.9 144 61.8
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 2.8e-42 177.9 646 26.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 2.2e-39 168.3 551 27.2
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.9e-38 165.2 586 27.1
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 7.9e-37 159.8 167 49.1
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.0e-36 159.5 395 31.6
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 5.1e-36 157.1 522 27.2
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-35 156.0 395 29.9
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 8.1e-34 149.8 359 29.8
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.5e-32 145.6 321 32.7
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.2e-31 141.7 125 57.6
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 7.1e-30 136.7 282 32.3
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.0e-29 133.7 191 42.9
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 7.4e-27 126.7 232 34.1
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 6.7e-20 103.6 107 52.3
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.3e-19 100.9 124 45.2
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.2e-15 88.6 140 40.7
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.7e-07 62.4 163 30.1
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 2.2e-07 62.0 119 36.1
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.5e-07 60.1 98 32.7
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 8.5e-07 60.1 139 29.5
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 4.2e-06 57.8 42 66.7
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 4.2e-06 57.8 67 41.8


User provided reference genes

Program Settings