Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 6.3e-171 604.0 298 100.0
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.8e-160 568.2 289 96.9
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 9.4e-159 563.5 300 94.7
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.0e-112 410.6 288 75.3
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 2.2e-99 366.3 315 64.8
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 6.4e-99 364.8 292 68.2
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 6.1e-33 145.6 86 75.6
Dinv19203 Davidia involucrata HOM05D007028 ORTHO05D003658 1.4e-32 144.4 282 37.6
Actinidia23722 Actinidia chinensis HOM05D007814 ORTHO05D009902 5.2e-32 142.5 310 33.5
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 2.6e-31 140.2 296 36.5
MD05G1175300 Malus domestica HOM05D007028 ORTHO05D003658 1.8e-29 134.0 310 34.2
Prupe.8G203000 Prunus persica HOM05D007028 ORTHO05D003658 2.4e-29 133.7 310 33.9
COL.COLO4_04560 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.6e-28 131.0 304 35.2
MD10G1164400 Malus domestica HOM05D007028 ORTHO05D003658 3.5e-28 129.8 303 33.3
Cfa002571 Carpinus fangiana HOM05D007028 ORTHO05D003658 5.9e-28 129.0 305 33.8
Potri.002G242400 Populus trichocarpa HOM05D007028 ORTHO05D003658 5.9e-28 129.0 323 31.9
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 1.3e-27 127.9 304 30.9
TPR.G23292 Trifolium pratense HOM05D007028 ORTHO05D003658 1.7e-27 127.5 302 33.4
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 1.5e-26 124.4 89 65.2
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 1.9e-26 124.0 310 32.6
Thecc.01G225600 Theobroma cacao HOM05D007028 ORTHO05D003658 2.5e-26 123.6 311 34.1
QL09p054524 Quercus lobata HOM05D007028 ORTHO05D003658 3.3e-26 123.2 82 69.5
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 4.3e-26 122.9 84 69.0
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 7.3e-26 122.1 310 32.3
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 1.2e-25 121.3 80 63.8
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 1.2e-25 121.3 106 53.8
Medtr7g057900 Medicago truncatula HOM05D007028 ORTHO05D003658 1.6e-25 120.9 80 67.5
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 2.8e-25 120.2 145 45.5
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 3.6e-25 119.8 85 61.2
Actinidia37594 Actinidia chinensis HOM05D007028 ORTHO05D003658 6.2e-25 119.0 289 31.1
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.2e-25 119.0 310 31.6
Glyma.03G080500 Glycine max HOM05D007028 ORTHO05D003658 1.0e-24 118.2 294 33.7
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 1.0e-24 118.2 83 61.4
Lsat_1_v5_gn_9_12301 Lactuca sativa HOM05D007028 ORTHO05D003658 1.8e-24 117.5 112 52.7
Manes.12G044800 Manihot esculenta HOM05D007028 ORTHO05D003658 3.1e-24 116.7 295 30.8
Ciclev10023784m.g Citrus clementina HOM05D007028 ORTHO05D003658 4.0e-24 116.3 296 32.4
Gohir.A11G138300 Gossypium hirsutum HOM05D007028 ORTHO05D003658 5.2e-24 115.9 81 67.9
Gorai.007G154400 Gossypium raimondii HOM05D007028 ORTHO05D003658 5.2e-24 115.9 81 67.9
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 6.8e-24 115.5 89 64.0
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 1.5e-23 114.4 286 32.5
Gohir.D11G144200 Gossypium hirsutum HOM05D007028 ORTHO05D003658 1.5e-23 114.4 81 66.7
Psat5g168520 Pisum sativum HOM05D007028 ORTHO05D003658 2.0e-23 114.0 211 37.0
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 1.3e-22 111.3 80 63.8
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.7e-22 110.9 306 28.8
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 4.9e-22 109.4 100 56.0
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.4e-21 107.8 73 64.4
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 1.9e-21 107.5 81 58.0
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.4e-21 107.1 73 63.0
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 2.4e-21 107.1 81 60.5
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 5.4e-21 105.9 77 62.3
Eucgr.H01353 Eucalyptus grandis HOM05D007028 ORTHO05D003658 9.2e-21 105.1 81 63.0
Manes.08G105400 Manihot esculenta HOM05D007028 ORTHO05D003658 9.2e-21 105.1 81 59.3
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 1.2e-20 104.8 176 39.2
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 2.0e-20 104.0 73 63.0
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 2.7e-20 103.6 84 58.3
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 3.5e-20 103.2 147 38.8
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 3.5e-20 103.2 145 38.6
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 6.0e-20 102.4 81 58.0
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 6.0e-20 102.4 75 61.3
Haze_24802 Corylus avellana HOM05D007028 ORTHO05D003658 6.6e-19 99.0 64 68.8
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 2.3e-16 90.5 80 48.8
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 9.8e-15 85.1 76 44.7
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.3e-14 84.7 69 49.3
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.7e-14 84.3 91 46.2
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 8.3e-14 82.0 78 41.0
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 1.1e-13 81.6 80 47.5
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 3.2e-13 80.1 74 45.9
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 5.4e-13 79.3 68 48.5
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 7.1e-13 79.0 70 50.0
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 7.1e-13 79.0 137 32.8
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 9.2e-13 78.6 69 42.0
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.6e-12 77.8 67 47.8
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 2.7e-12 77.0 68 48.5
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 2.7e-12 77.0 74 44.6
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 2.7e-12 77.0 68 48.5
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 2.7e-12 77.0 152 33.6
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 3.5e-12 76.6 93 40.9
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 6.0e-12 75.9 74 43.2
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 6.0e-12 75.9 137 32.8
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.8e-12 75.5 108 38.0
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.0e-11 75.1 68 48.5
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.0e-11 75.1 77 44.2
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 1.0e-11 75.1 68 48.5
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.3e-11 74.7 114 34.2
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 1.7e-11 74.3 117 37.6
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 1.7e-11 74.3 68 44.1
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 1.7e-11 74.3 133 30.1
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 1.7e-11 74.3 67 44.8
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 2.3e-11 73.9 79 36.7
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.3e-11 73.9 101 35.6
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 2.3e-11 73.9 67 44.8
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.3e-11 73.9 67 44.8
Actinidia18232 Actinidia chinensis HOM05D007028 ORTHO05D003658 3.0e-11 73.6 59 45.8
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 3.0e-11 73.6 80 46.2
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 3.9e-11 73.2 100 39.0
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 3.9e-11 73.2 109 37.6
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 6.6e-11 72.4 112 36.6
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 6.6e-11 72.4 108 37.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 6.6e-11 72.4 163 31.3
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 8.6e-11 72.0 68 44.1
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 8.6e-11 72.0 68 47.1
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.6e-11 72.0 68 47.1
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.6e-11 72.0 68 47.1
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.6e-11 72.0 68 47.1
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.6e-11 72.0 68 47.1
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 8.6e-11 72.0 80 42.5
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.1e-10 71.6 140 33.6
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 1.5e-10 71.2 93 40.9
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.9e-10 70.9 108 36.1
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.9e-10 70.9 67 44.8
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 2.5e-10 70.5 141 29.1
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 4.3e-10 69.7 82 37.8
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.3e-10 69.7 108 37.0
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 4.3e-10 69.7 82 43.9
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 4.3e-10 69.7 69 46.4
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 4.3e-10 69.7 137 34.3
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 4.3e-10 69.7 137 34.3
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 4.3e-10 69.7 104 37.5
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 7.3e-10 68.9 84 42.9
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 7.3e-10 68.9 151 32.5
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.2e-09 68.2 127 33.1
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.2e-09 68.2 117 34.2
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.6e-09 67.8 68 47.1
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 2.1e-09 67.4 129 31.8
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.1e-09 67.4 108 36.1
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.8e-09 67.0 77 39.0
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.6e-09 66.6 74 39.2
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 4.7e-09 66.2 87 39.1
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.7e-09 66.2 74 43.2
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 6.2e-09 65.9 84 41.7
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 6.2e-09 65.9 121 33.9
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 6.2e-09 65.9 115 33.0
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 6.2e-09 65.9 70 48.6
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 8.1e-09 65.5 121 33.9
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 1.1e-08 65.1 89 40.4
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 1.1e-08 65.1 84 35.7
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.1e-08 65.1 145 30.3
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.4e-08 64.7 77 40.3
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 1.4e-08 64.7 139 31.7
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.4e-08 64.7 69 43.5
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.3e-08 63.9 144 32.6
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.3e-08 63.9 87 40.2
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.1e-08 63.5 89 39.3
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.1e-08 63.5 101 33.7
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 4.0e-08 63.2 74 36.5
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 4.0e-08 63.2 70 44.3
Sabra02G0184700 Salix brachista HOM05D007028 ORTHO05D003658 4.0e-08 63.2 49 61.2
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 6.8e-08 62.4 77 37.7
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 6.8e-08 62.4 70 44.3
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 6.8e-08 62.4 76 39.5
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 6.8e-08 62.4 68 38.2
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 1.2e-07 61.6 137 29.2
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.5e-07 61.2 70 40.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 2.0e-07 60.8 68 48.5
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 2.0e-07 60.8 79 41.8
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 2.0e-07 60.8 67 43.3
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.0e-07 60.8 87 37.9
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.0e-07 60.8 87 37.9
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 3.4e-07 60.1 78 42.3
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 7.6e-07 58.9 75 36.0
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 7.6e-07 58.9 84 32.1
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 7.6e-07 58.9 84 32.1
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 9.9e-07 58.5 77 36.4
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 9.9e-07 58.5 173 30.1
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.3e-06 58.2 189 28.6
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.7e-06 57.8 77 36.4
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 1.7e-06 57.8 68 39.7
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 2.2e-06 57.4 82 36.6
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 2.9e-06 57.0 124 29.0
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.8e-06 56.6 109 30.3
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 4.9e-06 56.2 82 36.6
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 4.9e-06 56.2 54 48.1
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 6.4e-06 55.8 78 33.3
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 8.4e-06 55.5 134 30.6
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 8.4e-06 55.5 114 29.8
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 8.4e-06 55.5 77 37.7
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 8.4e-06 55.5 72 36.1
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 8.4e-06 55.5 75 38.7


User provided reference genes

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