Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 7.3e-65 250.4 123 100.0
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 4.2e-44 181.4 101 85.1
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.7e-43 178.7 98 87.8
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.7e-43 178.7 98 87.8
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 3.5e-43 178.3 98 86.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 3.5e-43 178.3 98 86.7
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 7.9e-43 177.2 98 86.7
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 5.6e-41 171.0 108 73.1
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 9.6e-41 170.2 119 68.9
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 3.7e-40 168.3 98 78.6
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 6.2e-40 167.5 98 80.6
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.1e-39 166.8 98 80.6
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 1.4e-39 166.4 98 78.6
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.8e-39 166.0 98 80.6
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.8e-39 166.0 98 79.6
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 2.4e-39 165.6 98 78.6
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 2.4e-39 165.6 98 79.6
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.4e-39 165.6 98 78.6
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 3.1e-39 165.2 98 80.6
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 3.1e-39 165.2 98 79.6
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 4.0e-39 164.9 98 79.6
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 4.0e-39 164.9 97 79.4
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 5.3e-39 164.5 98 79.6
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 6.9e-39 164.1 98 78.6
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.9e-39 164.1 98 78.6
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.9e-39 164.1 98 78.6
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 9.0e-39 163.7 98 77.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 9.0e-39 163.7 98 77.6
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 1.2e-38 163.3 98 78.6
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.2e-38 163.3 98 78.6
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.2e-38 163.3 98 78.6
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.5e-38 162.9 98 76.5
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 1.5e-38 162.9 98 78.6
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.0e-38 162.5 98 77.6
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 2.0e-38 162.5 98 77.6
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 2.0e-38 162.5 97 79.4
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.0e-38 162.5 98 76.5
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 2.6e-38 162.2 98 77.6
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 2.6e-38 162.2 98 77.6
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 2.6e-38 162.2 98 78.6
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 2.6e-38 162.2 98 78.6
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 3.4e-38 161.8 98 78.6
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 3.4e-38 161.8 98 78.6
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 3.4e-38 161.8 98 78.6
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 3.4e-38 161.8 98 78.6
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 3.4e-38 161.8 98 77.6
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 4.5e-38 161.4 98 77.6
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 4.5e-38 161.4 98 76.5
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 4.5e-38 161.4 98 76.5
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 5.8e-38 161.0 98 76.5
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 5.8e-38 161.0 102 73.5
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 5.8e-38 161.0 98 76.5
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 9.9e-38 160.2 98 76.5
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.3e-37 159.8 98 75.5
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 1.3e-37 159.8 98 77.6
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 1.3e-37 159.8 98 74.5
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 1.7e-37 159.5 98 75.5
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 2.2e-37 159.1 98 74.5
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 2.2e-37 159.1 98 76.5
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 2.2e-37 159.1 98 75.5
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 2.9e-37 158.7 98 74.5
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 2.9e-37 158.7 98 74.5
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 3.8e-37 158.3 98 74.5
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 4.9e-37 157.9 98 75.5
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 4.9e-37 157.9 98 74.5
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 4.9e-37 157.9 98 75.5
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 6.4e-37 157.5 98 74.5
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 6.4e-37 157.5 98 74.5
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 6.4e-37 157.5 98 76.5
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 8.4e-37 157.1 98 74.5
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 1.1e-36 156.8 98 73.5
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 1.1e-36 156.8 98 75.5
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 1.4e-36 156.4 98 75.5
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.9e-36 156.0 98 74.5
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.9e-36 156.0 98 75.5
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.4e-36 155.6 97 75.3
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 2.4e-36 155.6 97 75.3
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 3.2e-36 155.2 98 74.5
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 9.3e-36 153.7 98 72.4
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 9.3e-36 153.7 98 72.4
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 1.2e-35 153.3 98 72.4
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 1.6e-35 152.9 98 74.5
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.6e-35 152.9 110 68.2
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 1.6e-35 152.9 98 72.4
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 3.5e-35 151.8 99 75.8
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 1.9e-33 146.0 97 73.2
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 1.4e-28 129.8 81 75.3
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 5.5e-28 127.9 98 57.1
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.3e-26 122.5 98 57.1
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 7.4e-25 117.5 98 61.2
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 7.4e-25 117.5 98 54.1
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 9.7e-25 117.1 126 52.4
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 1.3e-24 116.7 101 53.5
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.6e-24 116.3 65 78.5
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.7e-21 106.3 98 46.9
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 2.6e-14 82.4 55 67.3
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 4.4e-09 65.1 42 66.7


User provided reference genes

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