Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.5e-55 219.2 101 100.0
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 5.5e-50 200.7 101 92.1
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.6e-49 199.1 101 92.1
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 1.3e-38 162.9 105 76.2
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 5.9e-36 154.1 98 76.5
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 2.9e-35 151.8 98 75.5
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 9.7e-31 136.7 107 59.8
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 6.9e-29 130.6 110 56.4
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 9.0e-29 130.2 103 60.2
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 2.0e-28 129.0 101 60.4
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 2.0e-28 129.0 102 60.8
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 7.7e-28 127.1 105 57.1
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 1.3e-27 126.3 71 73.2
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 1.3e-27 126.3 101 57.4
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.7e-27 125.9 100 59.0
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 1.7e-27 125.9 100 60.0
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.7e-27 125.9 102 59.8
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.9e-27 125.2 102 61.8
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 3.8e-27 124.8 104 56.7
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.0e-27 124.4 96 59.4
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 5.0e-27 124.4 103 59.2
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 5.0e-27 124.4 103 59.2
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 5.0e-27 124.4 103 58.3
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 6.5e-27 124.0 103 60.2
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 8.5e-27 123.6 106 55.7
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 8.5e-27 123.6 102 60.8
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.1e-26 123.2 100 59.0
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.1e-26 123.2 106 55.7
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 1.4e-26 122.9 107 56.1
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.9e-26 122.5 103 58.3
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.9e-26 122.5 104 57.7
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 2.5e-26 122.1 105 57.1
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 2.5e-26 122.1 102 56.9
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 3.2e-26 121.7 89 65.2
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.2e-26 121.7 104 57.7
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 5.5e-26 120.9 102 57.8
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 5.5e-26 120.9 56 89.3
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 7.2e-26 120.6 104 56.7
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 7.2e-26 120.6 103 57.3
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 9.4e-26 120.2 81 63.0
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 9.4e-26 120.2 104 55.8
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 1.2e-25 119.8 110 54.5
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 1.6e-25 119.4 103 56.3
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 2.1e-25 119.0 104 55.8
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 2.7e-25 118.6 61 82.0
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 4.6e-25 117.9 102 57.8
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 6.1e-25 117.5 103 54.4
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 6.1e-25 117.5 105 57.1
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 7.9e-25 117.1 58 79.3
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 7.9e-25 117.1 83 60.2
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 1.4e-24 116.3 104 54.8
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.4e-24 116.3 53 92.5
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 1.8e-24 115.9 96 58.3
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 2.3e-24 115.5 104 52.9
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 3.0e-24 115.2 107 56.1
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 3.9e-24 114.8 104 58.7
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 5.1e-24 114.4 95 57.9
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 5.1e-24 114.4 110 49.1
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 5.1e-24 114.4 72 66.7
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 5.1e-24 114.4 55 85.5
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 6.7e-24 114.0 110 51.8
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 6.7e-24 114.0 101 58.4
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 8.8e-24 113.6 110 55.5
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 8.8e-24 113.6 110 55.5
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 8.8e-24 113.6 110 55.5
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 8.8e-24 113.6 109 56.0
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 1.1e-23 113.2 85 61.2
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.1e-23 113.2 96 55.2
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.5e-23 112.8 105 57.1
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 2.0e-23 112.5 105 56.2
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 2.5e-23 112.1 98 58.2
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.5e-23 112.1 62 74.2
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 3.3e-23 111.7 99 57.6
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.3e-23 111.3 108 55.6
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 7.4e-23 110.5 110 53.6
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 9.7e-23 110.2 50 90.0
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 9.7e-23 110.2 78 65.4
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 9.7e-23 110.2 101 57.4
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 1.3e-22 109.8 97 54.6
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 1.7e-22 109.4 57 78.9
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 2.2e-22 109.0 52 86.5
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 3.7e-22 108.2 59 79.7
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 6.3e-22 107.5 108 54.6
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 6.3e-22 107.5 108 54.6
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 6.3e-22 107.5 108 54.6
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 6.3e-22 107.5 53 84.9
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 6.3e-22 107.5 93 58.1
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 1.1e-21 106.7 55 80.0
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.8e-21 105.9 104 53.8
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 2.4e-21 105.5 98 53.1
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 88.0
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 3.1e-21 105.1 103 49.5
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 5.3e-21 104.4 50 86.0
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 5.3e-21 104.4 65 64.6
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 6.9e-21 104.0 96 54.2
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 4.5e-20 101.3 112 48.2
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 1.0e-19 100.1 52 76.9
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 1.3e-19 99.8 101 51.5
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 1.3e-19 99.8 62 66.1
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 1.7e-19 99.4 62 66.1
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 3.8e-19 98.2 101 51.5
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 5.0e-19 97.8 47 80.9
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 6.5e-19 97.4 99 49.5
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 1.4e-18 96.3 110 45.5
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 1.4e-18 96.3 105 47.6
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 2.7e-17 92.0 74 58.1
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 4.7e-17 91.3 92 44.6
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 6.7e-16 87.4 106 42.5
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 4.4e-15 84.7 49 63.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 1.4e-13 79.7 53 60.4


User provided reference genes

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