Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g020170 Solanum pennellii HOM05D001206 ORTHO05D393833 7.7e-52 206.8 102 100.0
Sopen01g048720 Solanum pennellii HOM05D001206 ORTHO05D002068 1.5e-18 96.3 57 77.2
CAN.G504.54 Capsicum annuum HOM05D001206 ORTHO05D002068 5.6e-18 94.4 57 77.2
Nitab4.5_0009020g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 8.0e-17 90.5 57 73.7
Peaxi162Scf00299g00236 Petunia axillaris HOM05D001206 ORTHO05D002068 1.0e-16 90.1 57 71.9
PGSC0003DMG402003118 Solanum tuberosum HOM05D001206 ORTHO05D002068 1.0e-16 90.1 57 73.7
CAN.G504.53 Capsicum annuum HOM05D001206 ORTHO05D002068 3.0e-16 88.6 56 73.2
Nitab4.5_0010352g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 3.0e-16 88.6 57 71.9
CAN.G504.52 Capsicum annuum HOM05D001206 ORTHO05D002068 4.0e-16 88.2 55 70.9
Sopen01g048730 Solanum pennellii HOM05D001206 ORTHO05D002068 4.4e-15 84.7 55 70.9
Solyc01g106360.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 2.2e-14 82.4 55 69.1
CSS0000304 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 6.4e-14 80.9 57 64.9
Solyc01g106340.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 5.4e-13 77.8 57 61.4
Peaxi162Scf00016g03464 Petunia axillaris HOM05D001206 ORTHO05D002068 7.0e-13 77.4 57 61.4
Sopen01g048710 Solanum pennellii HOM05D001206 ORTHO05D002068 7.0e-13 77.4 57 61.4
Actinidia00326 Actinidia chinensis HOM05D001206 ORTHO05D002068 9.2e-13 77.0 54 63.0
Oeu041088.1 Olea europaea HOM05D001206 ORTHO05D002068 9.2e-13 77.0 57 59.6
Actinidia02414 Actinidia chinensis HOM05D001206 ORTHO05D002068 1.2e-12 76.6 54 63.0
CSS0023121 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.2e-12 76.6 57 61.4
CSS0046406 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 1.2e-12 76.6 57 61.4
Oeu059886.1 Olea europaea HOM05D001206 ORTHO05D002068 4.6e-12 74.7 57 59.6
Lj9A342T54 Lonicera japonica HOM05D001206 ORTHO05D002068 1.0e-11 73.6 55 60.0
vmacro01903 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 1.0e-11 73.6 57 59.6
DCAR_029282 Daucus carota HOM05D001206 ORTHO05D002068 1.3e-11 73.2 57 57.9
Migut.B00517 Erythranthe guttata HOM05D001206 ORTHO05D002068 1.3e-11 73.2 54 61.1
Nitab4.5_0002335g0070 Nicotiana tabacum HOM05D001206 ORTHO05D002068 1.7e-11 72.8 56 57.1
SGA_v2.0_scaffold342G49396 Striga asiatica HOM05D001206 ORTHO05D002068 1.7e-11 72.8 57 59.6
PSO700G0067 Papaver somniferum HOM05D001206 ORTHO05D002068 3.0e-11 72.0 54 57.4
Aqoxy425s001 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 5.0e-11 71.2 54 57.4
Aqoxy6G00631 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 5.0e-11 71.2 54 57.4
PSO761G0240 Papaver somniferum HOM05D001206 ORTHO05D002068 5.0e-11 71.2 54 57.4
MSTRG.20250 Avicennia marina HOM05D001206 ORTHO05D002068 1.1e-10 70.1 54 59.3
Eucgr.I02568 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.5e-10 69.7 54 53.7
HanXRQChr10g0291231 Helianthus annuus HOM05D001206 ORTHO05D002068 1.5e-10 69.7 57 56.1
Rhsim05G0095600 Rhododendron simsii HOM05D001206 ORTHO05D002068 1.5e-10 69.7 54 57.4
Hund00402 Selenicereus undatus HOM05D001206 ORTHO05D002068 1.5e-10 69.7 54 53.7
ECA236G0460 Erigeron canadensis HOM05D001206 ORTHO05D002068 1.9e-10 69.3 56 62.5
MSTRG.16638 Avicennia marina HOM05D001206 ORTHO05D002068 2.5e-10 68.9 57 59.6
Lj5A225G70 Lonicera japonica HOM05D001206 ORTHO05D002068 2.5e-10 68.9 56 57.1
TAR628G1628 Trochodendron aralioides HOM05D001206 ORTHO05D002068 2.5e-10 68.9 54 50.0
vmacro19593 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 2.5e-10 68.9 56 58.9
ECA234G3918 Erigeron canadensis HOM05D001206 ORTHO05D002068 4.3e-10 68.2 57 54.4
Lsat_1_v5_gn_7_83060 Lactuca sativa HOM05D001206 ORTHO05D002068 4.3e-10 68.2 68 50.0
Cc02_g20550 Coffea canephora HOM05D001206 ORTHO05D002068 5.6e-10 67.8 54 59.3
PGSC0003DMG401003118 Solanum tuberosum HOM05D001206 ORTHO05D002068 5.6e-10 67.8 42 69.0
Cpa.g.sc20.48 Carica papaya HOM05D001206 ORTHO05D002068 7.3e-10 67.4 55 49.1
GSVIVG01038529001 Vitis vinifera HOM05D001206 ORTHO05D002068 9.5e-10 67.0 52 53.8
Dinv08963 Davidia involucrata HOM05D001206 ORTHO05D002068 1.2e-09 66.6 49 59.2
Eucgr.I02569 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.6e-09 66.2 54 50.0
Gohir.A13G049200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.6e-09 66.2 54 55.6
Gohir.D13G047700 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.6e-09 66.2 54 55.6
Gorai.013G053300 Gossypium raimondii HOM05D001206 ORTHO05D002068 2.1e-09 65.9 54 55.6
AUR62030916 Chenopodium quinoa HOM05D001206 ORTHO05D002068 2.8e-09 65.5 53 52.8
HPP92_017097 Vanilla planifolia HOM05D001206 ORTHO05D002068 2.8e-09 65.5 58 50.0
HPP92_017107 Vanilla planifolia HOM05D001206 ORTHO05D002068 2.8e-09 65.5 58 50.0
Nn1g05689 Nelumbo nucifera HOM05D001206 ORTHO05D002068 6.2e-09 64.3 52 55.8
Gohir.A12G017600 Gossypium hirsutum HOM05D001206 ORTHO05D002068 8.0e-09 63.9 54 55.6
Gorai.008G018500 Gossypium raimondii HOM05D001206 ORTHO05D002068 8.0e-09 63.9 54 55.6
SalBow6G5084 Salvia bowleyana HOM05D001206 ORTHO05D002068 8.0e-09 63.9 55 56.4
Gohir.D12G018200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.1e-08 63.5 54 55.6
Manes.10G094600 Manihot esculenta HOM05D001206 ORTHO05D002068 1.8e-08 62.8 52 51.9
Thecc.02G124600 Theobroma cacao HOM05D001206 ORTHO05D002068 1.8e-08 62.8 54 51.9
Sed0003330 Sechium edule HOM05D001206 ORTHO05D002068 2.3e-08 62.4 52 51.9
Solyc01g106330.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 2.3e-08 62.4 55 54.5
PGSC0003DMG400003120 Solanum tuberosum HOM05D001206 ORTHO05D002068 2.3e-08 62.4 56 51.8
Ah.01g007260 Amaranthus hybridus HOM05D001206 ORTHO05D002068 4.0e-08 61.6 52 48.1
CAN.G504.50 Capsicum annuum HOM05D001206 ORTHO05D002068 4.0e-08 61.6 56 50.0
Glyma.13G254200 Glycine max HOM05D001206 ORTHO05D002068 4.0e-08 61.6 52 50.0
HanXRQChr08g0227111 Helianthus annuus HOM05D001206 ORTHO05D002068 4.0e-08 61.6 58 51.7
EL10Ac9g22131 Beta vulgaris HOM05D001206 ORTHO05D002068 5.2e-08 61.2 54 50.0
CAN.G504.51 Capsicum annuum HOM05D001206 ORTHO05D002068 5.2e-08 61.2 41 63.4
CiPaw.05G026500 Carya illinoinensis HOM05D001206 ORTHO05D002068 5.2e-08 61.2 57 45.6
Ah.01g024200 Amaranthus hybridus HOM05D001206 ORTHO05D002068 6.8e-08 60.8 53 49.1
AUR62027076 Chenopodium quinoa HOM05D001206 ORTHO05D002068 6.8e-08 60.8 53 49.1
Glyma.15G060700 Glycine max HOM05D001206 ORTHO05D002068 6.8e-08 60.8 52 48.1
ATR0800G073 Amborella trichopoda HOM05D001206 ORTHO05D002068 8.9e-08 60.5 57 45.6
MBI16_g44751_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D002068 8.9e-08 60.5 52 50.0
Prupe.8G076300 Prunus persica HOM05D001206 ORTHO05D002068 8.9e-08 60.5 51 52.9
AT5G64440 Arabidopsis thaliana HOM05D001206 ORTHO05D002068 1.2e-07 60.1 54 48.1
Sabra16G0178300 Salix brachista HOM05D001206 ORTHO05D002068 1.2e-07 60.1 52 48.1
VMungo0540G1701 Vigna mungo HOM05D001206 ORTHO05D002068 1.2e-07 60.1 52 48.1
AL8G41810 Arabidopsis lyrata HOM05D001206 ORTHO05D002068 1.5e-07 59.7 54 48.1
CANSAT54G1477 Cannabis sativa HOM05D001206 ORTHO05D002068 1.5e-07 59.7 54 46.3
CARHR278410 Cardamine hirsuta HOM05D001206 ORTHO05D002068 2.0e-07 59.3 54 48.1
CiPaw.05G026300 Carya illinoinensis HOM05D001206 ORTHO05D002068 2.0e-07 59.3 57 43.9
Sopen01g048700 Solanum pennellii HOM05D001206 ORTHO05D002068 2.0e-07 59.3 53 54.7
Potri.001G285900 Populus trichocarpa HOM05D001206 ORTHO05D002068 2.6e-07 58.9 52 48.1
QL11p026734 Quercus lobata HOM05D001206 ORTHO05D002068 2.6e-07 58.9 52 50.0
BcaB07g29744 Brassica carinata HOM05D001206 ORTHO05D002068 3.4e-07 58.5 54 48.1
Carub.0008s2524 Capsella rubella HOM05D001206 ORTHO05D002068 3.4e-07 58.5 54 48.1
DCAR_005658 Daucus carota HOM05D001206 ORTHO05D002068 3.4e-07 58.5 48 52.1
Phvul.006G199100 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 3.4e-07 58.5 52 46.2
RcHm_v2.0_Chr6g0269381 Rosa chinensis HOM05D001206 ORTHO05D002068 3.4e-07 58.5 44 61.4
TWI14G1249 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 3.4e-07 58.5 54 46.3
MELO3C018563.2 Cucumis melo HOM05D001206 ORTHO05D002068 4.4e-07 58.2 52 50.0
Lj6g0027071 Lotus japonicus HOM05D001206 ORTHO05D002068 4.4e-07 58.2 52 44.2
PGR142G2427 Punica granatum HOM05D001206 ORTHO05D002068 4.4e-07 58.2 49 51.0
BcaC03g18264 Brassica carinata HOM05D001206 ORTHO05D002068 7.5e-07 57.4 54 44.4
A02p43320 Brassica napus HOM05D001206 ORTHO05D002068 7.5e-07 57.4 54 44.4
C02p63380 Brassica napus HOM05D001206 ORTHO05D002068 7.5e-07 57.4 54 44.4
BolC2t12406H Brassica oleracea HOM05D001206 ORTHO05D002068 7.5e-07 57.4 54 44.4
BraA02t09258Z Brassica rapa HOM05D001206 ORTHO05D002068 7.5e-07 57.4 54 44.4
ClCG09G016410 Citrullus lanatus HOM05D001206 ORTHO05D002068 9.8e-07 57.0 52 50.0
Haze_10389 Corylus avellana HOM05D001206 ORTHO05D002068 9.8e-07 57.0 55 49.1
FvH4_2g11120 Fragaria vesca HOM05D001206 ORTHO05D002068 9.8e-07 57.0 44 59.1
FAN24G1517 Fragaria x ananassa HOM05D001206 ORTHO05D002068 9.8e-07 57.0 44 59.1
FAN27G1668 Fragaria x ananassa HOM05D001206 ORTHO05D002068 9.8e-07 57.0 44 59.1
Aa31LG1G17460 Aethionema arabicum HOM05D001206 ORTHO05D002068 1.3e-06 56.6 54 44.4
CsaV3_7G007390 Cucumis sativus L. HOM05D001206 ORTHO05D002068 1.3e-06 56.6 52 50.0
Thhalv10003835m.g Eutrema salsugineum HOM05D001206 ORTHO05D002068 1.3e-06 56.6 63 41.3
Lsat_1_v5_gn_5_110881 Lactuca sativa HOM05D001206 ORTHO05D002068 1.3e-06 56.6 48 50.0
Medtr2g010180 Medicago truncatula HOM05D001206 ORTHO05D002068 1.3e-06 56.6 54 40.7
Lalb_Chr20g0122751 Lupinus albus HOM05D001206 ORTHO05D002068 1.7e-06 56.2 52 42.3
Psat1g212600 Pisum sativum HOM05D001206 ORTHO05D002068 1.7e-06 56.2 54 40.7
A06p31100 Brassica napus HOM05D001206 ORTHO05D002068 2.9e-06 55.5 54 42.6
FAN15G0254 Fragaria x ananassa HOM05D001206 ORTHO05D002068 2.9e-06 55.5 44 59.1
THA.LOC104799673 Tarenaya hassleriana HOM05D001206 ORTHO05D002068 2.9e-06 55.5 49 46.9
BcaC01g02682 Brassica carinata HOM05D001206 ORTHO05D002068 3.7e-06 55.1 54 42.6
C03p61820 Brassica napus HOM05D001206 ORTHO05D002068 3.7e-06 55.1 54 42.6
BolC3t18443H Brassica oleracea HOM05D001206 ORTHO05D002068 3.7e-06 55.1 54 42.6
BraA06t26053Z Brassica rapa HOM05D001206 ORTHO05D002068 3.7e-06 55.1 54 42.6
Sp2g27530 Schrenkiella parvula HOM05D001206 ORTHO05D002068 3.7e-06 55.1 63 39.7
MD05G1050200 Malus domestica HOM05D001206 ORTHO05D002068 6.4e-06 54.3 51 49.0
TWI23G1316 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 8.3e-06 53.9 54 44.4


User provided reference genes

Program Settings