Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 4.5e-158 561.6 302 100.0
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 1.1e-122 444.1 254 95.3
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 6.4e-104 381.7 311 74.0
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 2.1e-102 376.7 314 72.6
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 6.0e-102 375.2 320 71.9
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 6.9e-90 335.1 308 69.8
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 2.5e-68 263.5 316 55.1
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 5.3e-66 255.8 309 50.8
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 1.1e-60 238.0 300 53.0
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 2.6e-60 236.9 302 52.0
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 1.3e-59 234.6 306 52.3
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 2.2e-59 233.8 310 51.9
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 1.8e-58 230.7 261 52.9
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 3.5e-57 226.5 302 51.0
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 1.7e-56 224.2 317 50.5
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 2.2e-56 223.8 302 52.6
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 2.9e-56 223.4 308 48.1
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 3.2e-55 219.9 308 50.6
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 1.6e-54 217.6 313 50.8
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 2.7e-54 216.9 314 51.0
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 3.6e-54 216.5 318 49.7
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 6.1e-54 215.7 306 51.0
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 1.8e-53 214.2 303 49.2
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 2.3e-53 213.8 311 48.2
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 6.7e-53 212.2 309 49.5
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 6.7e-53 212.2 326 45.4
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 1.5e-52 211.1 326 46.9
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 3.3e-52 209.9 301 50.5
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 2.2e-51 207.2 305 47.5
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 2.8e-51 206.8 359 43.7
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 1.8e-50 204.1 308 48.1
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 2.4e-50 203.8 325 48.3
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 2.0e-49 200.7 338 44.1
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 2.7e-49 200.3 326 46.9
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 3.5e-49 199.9 342 44.4
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 5.9e-49 199.1 343 43.1
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 5.9e-49 199.1 343 43.1
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 5.9e-49 199.1 303 46.5
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 7.7e-49 198.7 305 49.5
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 1.3e-48 198.0 320 48.4
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 1.7e-48 197.6 309 47.6
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 2.2e-48 197.2 316 47.2
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 2.9e-48 196.8 318 47.8
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 5.0e-48 196.1 315 46.3
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 6.5e-48 195.7 361 44.3
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 1.1e-47 194.9 307 46.9
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 1.1e-47 194.9 310 45.8
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 2.5e-47 193.7 311 47.3
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 2.5e-47 193.7 302 45.7
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 2.5e-47 193.7 308 47.1
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 3.2e-47 193.4 309 49.8
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 5.5e-47 192.6 303 47.5
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 9.4e-47 191.8 306 50.0
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 9.4e-47 191.8 306 47.1
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 1.2e-46 191.4 317 46.4
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 1.6e-46 191.0 328 42.4
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 4.7e-46 189.5 317 44.5
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 4.7e-46 189.5 349 39.0
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 8.0e-46 188.7 264 47.3
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 8.0e-46 188.7 264 47.3
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 1.0e-45 188.3 432 39.4
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 2.3e-45 187.2 318 44.7
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 3.0e-45 186.8 310 48.1
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 4.0e-45 186.4 315 46.0
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 2.0e-44 184.1 305 47.5
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 2.0e-44 184.1 323 45.2
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 2.6e-44 183.7 299 45.2
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 2.6e-44 183.7 313 48.2
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 4.4e-44 183.0 314 43.6
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 2.8e-43 180.3 401 38.2
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 4.8e-43 179.5 316 46.5
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 8.3e-43 178.7 307 45.9
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 1.4e-42 177.9 123 69.9
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 1.2e-41 174.9 308 44.2
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 1.2e-41 174.9 304 47.0
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 3.5e-41 173.3 251 48.6
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 3.5e-41 173.3 324 38.6
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 1.0e-40 171.8 316 46.2
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 2.9e-40 170.2 309 45.0
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 5.0e-40 169.5 316 45.9
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 1.1e-39 168.3 316 45.9
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 1.9e-39 167.5 310 45.2
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 3.2e-39 166.8 303 41.9
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 4.2e-39 166.4 259 50.6
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 7.2e-39 165.6 365 39.2
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 9.4e-39 165.2 307 45.9
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 2.1e-38 164.1 318 45.6
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 2.7e-38 163.7 311 45.7
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 3.6e-38 163.3 305 44.3
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 8.0e-38 162.2 352 37.2
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 1.4e-37 161.4 307 37.8
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 5.2e-37 159.5 318 44.7
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 8.8e-37 158.7 361 41.0
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 1.1e-34 151.8 108 67.6
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 1.1e-34 151.8 101 75.2
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 5.0e-32 142.9 99 70.7
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 4.3e-31 139.8 267 39.3
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 5.6e-31 139.4 265 44.2
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 1.0e-29 135.2 107 65.4
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 1.8e-29 134.4 99 67.7
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 3.4e-28 130.2 111 61.3
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 1.3e-27 128.3 110 61.8
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 8.3e-27 125.6 233 37.8
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 4.1e-26 123.2 248 38.3
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 7.0e-26 122.5 330 34.8
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 2.7e-25 120.6 258 36.8
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 4.6e-25 119.8 76 78.9
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 1.3e-24 118.2 305 39.7
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 6.2e-22 109.4 259 40.5
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 8.0e-22 109.0 253 43.1
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 6.8e-21 105.9 53 100.0
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 2.0e-20 104.4 64 76.6
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 3.7e-19 100.1 126 46.8
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 3.5e-17 93.6 62 74.2
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 1.0e-16 92.0 54 83.3
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 3.3e-15 87.0 54 77.8
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 5.6e-15 86.3 54 74.1
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 4.0e-13 80.1 59 59.3
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 2.0e-12 77.8 247 31.6
PRCOL_00004634 Prasinoderma coloniale HOM05D006498 ORTHO05D006377 1.2e-06 58.5 159 30.2


User provided reference genes

Program Settings