Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g018580 Solanum pennellii HOM05D004615 ORTHO05D000385 1.7e-69 265.8 124 100.0
CAN.G637.27 Capsicum annuum HOM05D000229 ORTHO05D000385 4.8e-32 141.4 119 56.3
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 8.0e-27 124.0 113 51.3
Sopen08g013620 Solanum pennellii HOM05D008041 ORTHO05D000385 1.1e-25 120.2 113 50.4
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 1.8e-23 112.8 113 46.0
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 1.8e-23 112.8 113 46.0
PGSC0003DMG400042422 Solanum tuberosum HOM05D008041 ORTHO05D000385 2.4e-23 112.5 67 79.1
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 5.3e-23 111.3 113 45.1
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 5.3e-23 111.3 113 45.1
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 5.3e-23 111.3 113 45.1
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 5.3e-23 111.3 113 45.1
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 7.0e-23 110.9 113 45.1
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 9.1e-23 110.5 113 44.2
AUR62019486 Chenopodium quinoa HOM05D004615 ORTHO05D000385 5.9e-22 107.8 125 40.0
Solyc01g034040.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.9e-22 107.8 113 44.2
Solyc02g081085.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.7e-22 107.5 113 44.2
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.0e-21 107.1 113 44.2
Solyc10g061845.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.0e-21 107.1 113 44.2
Solyc10g018713.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.1e-20 103.6 113 42.5
EL10Ac9g22640 Beta vulgaris HOM05D004615 ORTHO05D000385 1.9e-20 102.8 112 42.0
PGSC0003DMG400046569 Solanum tuberosum HOM05D004615 ORTHO05D019313 1.9e-20 102.8 58 75.9
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 3.2e-20 102.1 112 42.0
Sopen08g007140 Solanum pennellii HOM05D000107 ORTHO05D000570 3.2e-20 102.1 100 45.0
PGSC0003DMG400038814 Solanum tuberosum HOM05D004615 ORTHO05D000385 3.2e-20 102.1 58 75.9
EL10Ac1g01142 Beta vulgaris HOM05D004615 ORTHO05D000385 7.2e-20 100.9 112 41.1
EL10Ac1g01684 Beta vulgaris HOM05D004615 ORTHO05D000385 7.2e-20 100.9 112 41.1
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 7.2e-20 100.9 112 41.1
EL10Ac5g11185 Beta vulgaris HOM05D004615 ORTHO05D000385 7.2e-20 100.9 112 41.1
EL10As16g24148 Beta vulgaris HOM05D004615 ORTHO05D000385 7.2e-20 100.9 112 41.1
EL10Ac5g11855 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-19 99.8 112 40.2
Solyc05g032825.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.1e-19 99.4 100 45.0
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 3.6e-19 98.6 112 40.2
Sopen04g010730 Solanum pennellii HOM05D008041 ORTHO05D000385 3.6e-19 98.6 113 41.6
AUR62033141 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.7e-19 98.2 102 43.1
EL10Ac4g08049 Beta vulgaris HOM05D004615 ORTHO05D000385 6.1e-19 97.8 112 40.2
Sopen01g007430 Solanum pennellii HOM05D008041 ORTHO05D000385 8.0e-19 97.4 112 40.2
AUR62030655 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.4e-18 96.7 102 42.2
AUR62035941 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.4e-18 96.7 102 42.2
AUR62041916 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.4e-18 96.7 106 40.6
AUR62040424 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.0e-18 95.5 106 39.6
HanXRQChr04g0100871 Helianthus annuus HOM05D004615 ORTHO05D000385 1.5e-17 93.2 115 36.5
AUR62007768 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.0e-17 92.8 102 40.2
HanXRQChr02g0040071 Helianthus annuus HOM05D004615 ORTHO05D000385 5.7e-17 91.3 123 35.0
PGSC0003DMG400034515 Solanum tuberosum HOM05D008041 ORTHO05D000385 7.5e-17 90.9 113 42.5
AUR62020782 Chenopodium quinoa HOM05D004615 ORTHO05D000385 9.8e-17 90.5 106 37.7
HanXRQChr09g0240121 Helianthus annuus HOM05D004615 ORTHO05D000385 1.3e-16 90.1 118 35.6
Solyc08g150130.1 Solanum lycopersicum HOM05D004615 ORTHO05D000385 3.7e-16 88.6 142 40.1
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 8.3e-16 87.4 109 36.7
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 8.3e-16 87.4 109 36.7
Sc06g0003990 Simmondsia chinensis HOM05D004615 ORTHO05D000385 8.3e-16 87.4 120 35.8
AUR62027501 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.4e-15 85.9 83 43.4
AUR62042260 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.1e-15 85.5 106 37.7
Sopen02g007300 Solanum pennellii HOM05D002469 ORTHO05D000385 7.0e-15 84.3 73 54.8
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 9.1e-15 84.0 110 35.5
Medtr5g061300 Medicago truncatula HOM05D004615 ORTHO05D000385 1.6e-14 83.2 117 35.9
Sc11g0005200 Simmondsia chinensis HOM05D014970 ORTHO05D019369 1.6e-14 83.2 101 36.6
AUR62014273 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.7e-14 82.4 80 43.8
Hund03726 Selenicereus undatus HOM05D004615 ORTHO05D000385 3.5e-14 82.0 110 36.4
Psat5g236880 Pisum sativum HOM05D008859 ORTHO05D007166 5.9e-14 81.3 115 37.4
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 5.9e-14 81.3 83 42.2
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 5.9e-14 81.3 83 42.2
AUR62015616 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.7e-14 80.9 84 38.1
AUR62030145 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.7e-14 80.9 90 42.2
DCAR_032097 Daucus carota HOM05D004615 ORTHO05D000385 1.0e-13 80.5 96 38.5
AUR62042512 Chenopodium quinoa HOM05D014060 ORTHO05D000385 1.7e-13 79.7 110 32.7
Sopen10g008660 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.7 64 57.8
AUR62024348 Chenopodium quinoa HOM05D014060 ORTHO05D000385 2.9e-13 79.0 117 34.2
Psat5g270240 Pisum sativum HOM05D008859 ORTHO05D007166 6.5e-13 77.8 115 36.5
Hund13368 Selenicereus undatus HOM05D009682 ORTHO05D000385 6.5e-13 77.8 103 35.0
Hund31150 Selenicereus undatus HOM05D004615 ORTHO05D000385 6.5e-13 77.8 110 33.6
Lj1g0024910 Lotus japonicus HOM05D004615 ORTHO05D007166 8.5e-13 77.4 112 37.5
AUR62005789 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.5e-12 75.9 78 43.6
Lj2g0009854 Lotus japonicus HOM05D008859 ORTHO05D007166 2.5e-12 75.9 97 38.1
COL.COLO4_08701 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.2e-12 75.1 121 32.2
TPR.G13785 Trifolium pratense HOM05D004615 ORTHO05D000385 7.2e-12 74.3 115 33.0
AUR62037964 Chenopodium quinoa HOM05D014060 ORTHO05D000385 9.4e-12 73.9 110 30.9
Sopen10g021280 Solanum pennellii HOM05D008041 ORTHO05D000385 9.4e-12 73.9 68 51.5
Psat0s776g0040 Pisum sativum HOM05D004615 ORTHO05D000385 2.7e-11 72.4 101 34.7
AUR62010806 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.7e-11 71.6 109 29.4
AUR62019804 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.0e-10 70.5 109 28.4
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 1.8e-10 69.7 125 29.6
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 1.8e-10 69.7 125 29.6
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 2.3e-10 69.3 125 29.6
COL.COLO4_36623 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.0e-10 68.9 113 30.1
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 3.0e-10 68.9 95 33.7
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-10 68.6 94 34.0
Phvul.L001738 Phaseolus vulgaris HOM05D008859 ORTHO05D007166 4.0e-10 68.6 107 35.5
Solyc11g042873.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.0e-10 68.6 48 60.4
AUR62029526 Chenopodium quinoa HOM05D004615 ORTHO05D000385 5.2e-10 68.2 92 39.1
AUR62031856 Chenopodium quinoa HOM05D004615 ORTHO05D000385 5.2e-10 68.2 92 35.9
MBI01_g25641_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.2e-10 68.2 95 32.6
MBI14_g27230_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.2e-10 68.2 95 32.6
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.2e-10 68.2 95 32.6
SGA_v2.0_scaffold251G45054 Striga asiatica HOM05D004615 ORTHO05D000385 5.2e-10 68.2 108 31.5
TWI31G0781 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 5.2e-10 68.2 118 33.1
AUR62034936 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.8e-10 67.8 55 45.5
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 8.8e-10 67.4 94 35.1
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 1.2e-09 67.0 123 31.7
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-09 66.6 96 28.1
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-09 66.6 95 32.6
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-09 66.6 95 32.6
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.0e-09 66.2 94 34.0
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 2.0e-09 66.2 94 34.0
AUR62033658 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.6e-09 65.9 106 33.0
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 3.4e-09 65.5 107 30.8
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.4e-09 65.5 87 34.5
Solyc07g020915.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 3.4e-09 65.5 123 31.7
EL10Ac1g01725 Beta vulgaris HOM05D004615 ORTHO05D000385 4.4e-09 65.1 129 27.9
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 4.4e-09 65.1 89 31.5
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 4.4e-09 65.1 94 33.0
Lj4g0021021 Lotus japonicus HOM05D004615 ORTHO05D000385 7.5e-09 64.3 111 30.6
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.5e-09 64.3 87 33.3
Solyc08g016567.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.5e-09 64.3 58 50.0
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 9.8e-09 63.9 103 29.1
MBI14_g41280_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-08 63.2 95 30.5
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.2e-08 62.8 95 31.6
MBI15_g13426_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.8e-08 62.4 91 28.6
Psat3g193080 Pisum sativum HOM05D004615 ORTHO05D000385 2.8e-08 62.4 94 33.0
Solyc05g041113.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.8e-08 62.4 46 56.5
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 3.7e-08 62.0 101 27.7
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 6.3e-08 61.2 85 29.4
SGA_v2.0_scaffold107G30768 Striga asiatica HOM05D004615 ORTHO05D000385 6.3e-08 61.2 80 31.2
EL10Ac2g02989 Beta vulgaris HOM05D004615 ORTHO05D000385 1.4e-07 60.1 54 42.6
AUR62026239 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.4e-07 60.1 70 44.3
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.8e-07 59.7 80 32.5
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.8e-07 59.7 105 27.6
EL10Ac7g17625 Beta vulgaris HOM05D004615 ORTHO05D000385 2.4e-07 59.3 56 41.1
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 2.4e-07 59.3 97 27.8
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 3.1e-07 58.9 94 29.8
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 3.1e-07 58.9 94 29.8
MBI19_g00149_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.1e-07 58.5 85 30.6
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 4.1e-07 58.5 105 25.7
EL10Ac6g14405 Beta vulgaris HOM05D004615 ORTHO05D000385 5.4e-07 58.2 46 45.7
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 5.4e-07 58.2 94 29.8
MBI12_g24830_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.4e-07 58.2 96 26.0
Psat1g098040 Pisum sativum HOM05D009811 ORTHO05D007166 5.4e-07 58.2 101 31.7
PGSC0003DMG400004241 Solanum tuberosum HOM05D007930 ORTHO05D007166 5.4e-07 58.2 92 30.4
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.0e-07 57.8 97 29.9
Sc22g0004480 Simmondsia chinensis HOM05D014970 ORTHO05D000385 7.0e-07 57.8 65 35.4
Lsat_1_v5_gn_8_134701 Lactuca sativa HOM05D001309 ORTHO05D000385 9.2e-07 57.4 95 28.4
Nitab4.5_0004695g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 9.2e-07 57.4 93 29.0
Sc07g0005190 Simmondsia chinensis HOM05D010414 ORTHO05D000385 9.2e-07 57.4 58 48.3
Sopen04g011930 Solanum pennellii HOM05D007930 ORTHO05D007166 9.2e-07 57.4 100 29.0
Sopen12g015810 Solanum pennellii HOM05D007930 ORTHO05D007166 9.2e-07 57.4 100 29.0
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.2e-07 57.4 105 24.8
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.2e-07 57.4 105 24.8
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 9.2e-07 57.4 105 24.8
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 9.2e-07 57.4 105 24.8
PGSC0003DMG400039419 Solanum tuberosum HOM05D007930 ORTHO05D007166 1.2e-06 57.0 92 29.3
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.6e-06 56.6 103 29.1
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.6e-06 56.6 85 29.4
Nn1g09472 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.6e-06 56.6 104 27.9
AUR62037264 Chenopodium quinoa HOM05D004615 ORTHO05D000062 2.0e-06 56.2 70 42.9
AUR62043465 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.0e-06 56.2 84 32.1
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 2.0e-06 56.2 101 28.7
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.0e-06 56.2 97 29.9
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 2.7e-06 55.8 107 28.0
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 2.7e-06 55.8 85 29.4
AUR62031149 Chenopodium quinoa HOM05D004615 ORTHO05D000385 3.5e-06 55.5 73 41.1
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 3.5e-06 55.5 106 27.4
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 4.5e-06 55.1 103 26.2
AUR62034983 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.5e-06 55.1 71 35.2
EL10Ac2g02894 Beta vulgaris HOM05D004615 ORTHO05D000385 5.9e-06 54.7 64 43.8
CAN.G537.10 Capsicum annuum HOM05D007930 ORTHO05D007166 5.9e-06 54.7 70 34.3
MBI09_g41430_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.9e-06 54.7 72 30.6
vmacro21926 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.9e-06 54.7 94 30.9
vmacro23420 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 5.9e-06 54.7 94 30.9
AUR62042034 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.7e-06 54.3 67 41.8
Nitab4.5_0010582g0050 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.7e-06 54.3 91 28.6
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 7.7e-06 54.3 105 23.8


User provided reference genes

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