Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1826.6 1007 100.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1798.9 1007 98.5
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1572.4 1012 85.3
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1509.6 1010 83.9
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1376.3 1005 74.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1369.4 1010 72.7
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1359.0 1016 73.5
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1352.4 1022 70.6
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1345.9 1015 71.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1335.9 1013 70.7
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1329.3 1035 70.7
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1327.0 1010 71.1
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1322.4 1013 70.4
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1313.1 1016 70.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1312.0 1020 68.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1306.2 1047 68.7
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1305.8 993 70.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1305.0 1021 70.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1305.0 1014 68.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1300.8 1016 67.5
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1299.3 1019 68.5
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1297.0 1013 69.7
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1296.2 1014 69.2
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1293.9 1025 70.5
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1292.7 1024 68.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1291.9 1022 70.7
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1290.8 1020 68.6
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1290.0 1012 69.7
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1288.5 993 69.8
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1280.0 972 69.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1271.9 997 67.3
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1271.5 1031 66.8
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1270.8 1008 67.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1270.0 992 69.4
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1267.3 1013 66.6
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1263.1 1010 68.6
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1262.7 1005 67.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1259.6 1020 67.1
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1258.0 948 68.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1256.1 1014 66.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1256.1 1013 68.8
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1256.1 1023 65.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1255.0 1014 66.1
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1254.6 1027 66.5
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1251.5 1014 66.2
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1251.1 990 69.7
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1250.7 1019 65.4
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1248.8 967 70.2
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1247.6 1012 68.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1247.3 1035 66.0
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1245.7 1012 67.6
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1244.2 988 67.3
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1242.6 1016 65.5
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1239.2 1014 65.3
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1236.9 1042 64.9
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 1047 65.4
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1230.3 984 67.8
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1229.2 1011 66.3
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1228.0 1014 64.8
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1227.2 1021 66.5
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 1020 66.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1223.8 1037 65.3
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1219.5 948 67.3
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1218.8 1019 64.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1218.4 1010 66.4
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1216.8 1011 66.1
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1216.4 1018 67.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1215.3 993 65.6
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1214.9 1015 64.1
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1209.9 1002 67.0
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1204.9 1012 63.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1203.7 937 67.2
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1199.9 1015 62.4
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1194.1 971 65.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1193.7 1026 64.7
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1193.3 1000 62.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1192.2 1000 62.4
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1192.2 1002 62.9
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1191.4 1016 62.0
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1189.5 1017 61.6
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1187.9 1017 61.8
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1187.9 1010 62.1
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1186.4 1019 61.4
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1186.4 1017 61.5
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1186.0 1038 62.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1184.5 1017 62.1
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1181.8 1019 61.8
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1180.2 1019 61.6
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1172.1 939 64.7
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1169.1 942 64.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1162.9 1013 64.5
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1161.4 1057 59.3
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1156.4 953 65.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1154.8 946 63.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1154.0 951 63.3
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1151.3 1007 64.1
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1133.6 1010 61.2
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1128.2 1050 58.3
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1128.2 1033 60.2
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 0.0e+00 1110.1 740 84.7
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1099.0 1012 58.6
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1097.8 785 76.1
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1082.8 1023 58.7
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1080.9 889 65.2
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1078.9 787 74.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 8.9e-310 1067.0 793 71.1
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.4e-307 1058.9 851 65.3
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 4.4e-285 984.9 830 63.9
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.7e-281 973.0 949 54.5
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.3e-271 940.3 623 84.3
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 4.8e-271 938.3 704 72.2
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 6.9e-270 934.5 977 50.8
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.6e-269 932.6 989 49.8
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.8e-269 931.4 629 83.3
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 4.2e-267 925.2 955 52.8
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 5.3e-254 881.7 649 74.4
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.2e-253 880.6 981 48.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 4.1e-222 775.8 983 45.7
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 1.6e-210 737.3 629 67.4
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.0e-200 703.7 563 62.0
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.2e-199 700.3 536 71.8
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 5.2e-185 652.5 970 45.4
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 8.3e-183 645.2 689 49.8
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.8e-181 638.6 596 56.7
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.2e-158 563.5 1013 39.7
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.1e-150 538.5 569 51.5
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.3e-139 500.4 1024 33.2
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.4e-137 495.0 611 45.2
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-130 471.5 573 50.1
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 2.6e-128 464.2 999 30.3
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.0e-124 452.2 392 57.9
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-116 424.1 328 66.8
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.6e-109 401.7 913 31.5
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.0e-103 380.2 357 58.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 3.2e-102 377.5 559 45.6
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 5.5e-102 376.7 283 69.6
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 5.2e-100 370.2 276 70.3
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 7.5e-99 366.3 299 63.5
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 4.8e-98 363.6 568 42.4
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.4e-97 361.3 297 63.6
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.5e-96 357.5 411 47.0
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 5.9e-96 356.7 382 55.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 7.0e-89 333.2 265 64.5
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 1.1e-86 325.9 277 63.9
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.1e-85 320.1 555 39.5
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.2e-82 311.6 397 49.9
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 7.8e-80 303.1 299 58.5
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.6e-69 268.9 220 62.7
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 4.0e-68 264.2 428 42.3
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 6.8e-68 263.5 189 72.5
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.4e-66 256.9 243 60.9
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 3.5e-64 251.1 219 54.8
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.6e-64 250.8 584 32.4
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 2.8e-61 241.5 244 50.8
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 2.2e-58 231.9 264 53.0
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.1e-57 229.6 154 77.3
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.9e-54 218.8 225 55.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 4.3e-54 217.6 182 66.5
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 2.1e-53 215.3 308 43.5
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.1e-48 198.7 136 72.1
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.6e-48 197.6 163 66.3
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.6e-46 190.7 434 35.3
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.4e-44 186.0 420 35.5
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 9.6e-38 163.3 124 77.4
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-37 162.9 172 59.9
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.2e-27 129.8 159 46.5
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 7.6e-27 127.1 132 52.3
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.1e-25 123.2 230 37.4
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-25 122.5 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-25 122.5 74 75.7
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.5e-25 122.1 333 31.5
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.7e-24 118.6 89 65.2
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.3e-23 116.3 98 62.2
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.9e-22 112.5 122 50.0
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.6e-21 109.4 182 37.9
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.2e-21 109.0 409 29.1
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.5e-19 102.8 65 76.9
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 7.7e-19 100.5 164 38.4
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.1e-16 90.9 108 48.1
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 6.5e-10 70.9 164 35.4
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 1.1e-06 60.1 53 56.6


User provided reference genes

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