Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.2e-102 375.6 180 100.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 6.0e-100 367.5 180 97.2
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 9.3e-93 343.6 183 90.7
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.9e-85 319.3 183 82.5
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.5e-82 308.9 171 83.6
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.7e-78 296.2 183 76.5
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.3e-75 285.8 177 73.4
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.3e-75 285.8 177 73.4
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 6.7e-75 284.3 179 70.4
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 4.3e-74 281.6 183 69.4
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 9.6e-74 280.4 185 69.7
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 6.3e-73 277.7 181 70.7
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 8.2e-73 277.3 183 66.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.5e-71 273.1 177 69.5
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 1.5e-71 273.1 181 69.1
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.0e-71 272.7 183 69.9
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 3.4e-71 271.9 180 68.3
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 4.5e-71 271.6 183 64.5
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 5.9e-71 271.2 183 68.9
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 1.0e-70 270.4 180 69.4
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.0e-70 270.4 181 66.9
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 1.7e-70 269.6 183 68.3
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.8e-70 268.5 149 83.2
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 5.0e-70 268.1 179 67.6
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 5.0e-70 268.1 172 71.5
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 6.5e-70 267.7 180 68.3
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 8.5e-70 267.3 177 67.8
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.9e-69 266.2 174 68.4
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 1.9e-69 266.2 180 67.8
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.5e-69 265.8 182 65.9
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 5.5e-69 264.6 184 66.3
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 5.5e-69 264.6 181 66.9
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 7.2e-69 264.2 181 66.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.2e-68 263.5 185 63.8
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 6.1e-68 261.2 180 65.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 6.1e-68 261.2 177 67.2
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.9e-68 260.8 181 65.7
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.9e-68 260.8 181 66.3
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.0e-67 260.4 188 65.4
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.3e-67 260.0 185 65.9
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.3e-67 260.0 179 66.5
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.3e-67 260.0 180 65.6
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.3e-67 260.0 185 64.9
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.8e-67 259.6 175 67.4
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.8e-67 259.6 183 66.1
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.8e-67 259.6 174 67.8
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 2.3e-67 259.2 177 66.1
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.0e-67 258.8 179 64.8
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.9e-67 258.5 178 66.3
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 3.9e-67 258.5 178 66.9
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 5.1e-67 258.1 184 65.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 6.7e-67 257.7 182 62.6
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 8.7e-67 257.3 178 66.3
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 8.7e-67 257.3 181 63.0
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.1e-66 256.9 183 62.8
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.5e-66 256.5 184 62.5
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.9e-66 256.1 175 67.4
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.9e-66 256.1 175 66.9
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.9e-66 256.1 183 63.9
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 2.5e-66 255.8 185 63.8
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 4.3e-66 255.0 185 61.6
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 4.3e-66 255.0 175 64.6
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 4.3e-66 255.0 169 67.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 5.7e-66 254.6 178 64.6
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 9.7e-66 253.8 182 61.5
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.6e-65 253.1 171 66.1
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.6e-65 253.1 176 66.5
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 2.2e-65 252.7 178 65.2
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.2e-65 252.7 180 64.4
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 3.7e-65 251.9 180 61.1
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 3.7e-65 251.9 183 61.2
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 4.8e-65 251.5 174 63.8
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 8.2e-65 250.8 178 64.6
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 8.2e-65 250.8 176 64.2
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.1e-64 250.4 173 67.1
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.1e-64 250.4 176 64.2
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.4e-64 249.2 173 64.7
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 3.1e-64 248.8 172 65.7
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 5.3e-64 248.1 178 64.0
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 6.9e-64 247.7 180 60.0
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.4e-63 245.4 171 65.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.3e-62 243.4 178 62.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.7e-62 243.0 165 66.1
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 3.2e-61 238.8 180 60.6
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 3.2e-61 238.8 180 60.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.1e-60 236.1 173 59.5
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 2.7e-60 235.7 173 61.8
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.0e-59 233.8 173 61.3
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 1.1e-58 230.3 171 60.8
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.4e-58 228.4 176 59.7
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 5.7e-58 228.0 168 61.3
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 7.4e-58 227.6 156 66.0
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.7e-58 227.3 151 66.9
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 2.2e-57 226.1 171 58.5
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.2e-57 226.1 170 55.9
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.7e-57 225.3 155 64.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.4e-56 223.4 166 62.0
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 6.9e-56 221.1 164 61.0
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.9e-56 221.1 155 65.2
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 4.5e-55 218.4 169 59.2
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 8.5e-54 214.2 169 59.2
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.4e-51 206.8 149 63.1
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 5.2e-51 204.9 172 57.6
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 5.2e-51 204.9 156 59.6
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 3.5e-47 192.2 175 49.7
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.9e-45 186.4 182 47.8
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 4.2e-45 185.3 175 47.4
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.6e-44 182.2 177 45.8
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 3.3e-42 175.6 129 58.9
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 7.7e-39 164.5 142 59.2
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-37 160.2 123 56.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 3.0e-35 152.5 176 43.2
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.2e-29 132.1 131 51.9
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 1.3e-22 110.5 172 35.5
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 4.3e-21 105.5 75 64.0
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 2.0e-18 96.7 150 36.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 3.7e-17 92.4 189 34.9
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 7.8e-15 84.7 97 46.4
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.0e-14 84.3 60 55.0
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 5.4e-08 62.0 172 29.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 1.6e-07 60.5 170 29.4
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.6e-07 60.5 171 28.7
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 2.0e-07 60.1 170 29.4
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 2.0e-07 60.1 170 29.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 2.7e-07 59.7 171 29.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.7e-07 59.7 173 27.7
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 6.0e-07 58.5 172 27.9
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 7.8e-07 58.2 174 28.2
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 7.8e-07 58.2 171 28.1
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.0e-06 57.8 177 26.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.3e-06 57.4 169 28.4
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.3e-06 57.4 172 27.9
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.7e-06 57.0 174 28.2
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 1.7e-06 57.0 171 26.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 2.3e-06 56.6 171 28.7
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 2.3e-06 56.6 178 27.0
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.0e-06 56.2 174 27.6
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.0e-06 56.2 174 27.6
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 3.0e-06 56.2 174 27.6
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 3.0e-06 56.2 173 28.3
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 3.9e-06 55.8 155 31.0
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 3.9e-06 55.8 172 27.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 6.6e-06 55.1 169 28.4
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 6.6e-06 55.1 175 26.9
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 6.6e-06 55.1 173 27.7
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 6.6e-06 55.1 172 26.7
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 6.6e-06 55.1 173 27.7
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 6.6e-06 55.1 173 27.7
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 8.6e-06 54.7 174 28.2
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 8.6e-06 54.7 171 27.5
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 8.6e-06 54.7 171 27.5


User provided reference genes

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