Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 0.0e+00 1258.4 914 100.0
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 0.0e+00 1129.0 922 92.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 0.0e+00 1096.6 915 87.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 6.1e-241 838.2 813 74.7
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.8e-238 829.3 916 73.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.7e-230 803.5 916 66.8
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 3.6e-193 679.5 951 62.5
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.4e-99 368.6 947 49.2
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 2.3e-91 341.3 946 43.2
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 5.4e-88 330.1 935 47.4
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-86 325.5 931 48.1
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.3e-86 325.5 931 48.1
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.5e-85 322.0 984 44.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 2.5e-85 321.2 940 50.1
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 5.2e-83 313.5 957 47.5
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 6.8e-83 313.2 832 50.8
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 5.8e-82 310.1 302 63.9
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 7.8e-79 299.7 951 47.6
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 2.3e-78 298.1 281 62.6
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 7.3e-77 293.1 957 46.7
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 9.5e-77 292.7 977 48.5
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 3.6e-76 290.8 280 62.5
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 6.2e-76 290.0 937 45.3
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.1e-75 289.3 989 45.1
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.4e-75 288.9 225 72.0
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.8e-75 288.5 934 46.6
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.3e-75 288.1 985 44.4
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 5.2e-75 287.0 245 65.3
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.4e-74 284.3 246 65.4
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 2.2e-73 281.6 299 59.9
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 5.4e-72 276.9 933 44.3
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 5.4e-72 276.9 924 46.8
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 7.1e-72 276.6 935 45.2
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 9.2e-72 276.2 282 60.3
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.6e-71 273.9 927 45.7
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.9e-69 268.5 946 46.5
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 4.3e-69 267.3 297 55.6
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 5.6e-69 266.9 934 46.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 7.3e-69 266.5 282 59.2
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 8.1e-68 263.1 282 58.5
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.1e-67 262.7 964 44.2
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.8e-67 261.9 270 59.6
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.8e-67 261.9 944 46.3
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 6.9e-67 260.0 982 43.0
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.5e-66 258.8 240 64.6
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 2.0e-66 258.5 970 44.1
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 9.9e-66 256.1 300 55.7
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.3e-65 255.8 946 46.2
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.7e-65 255.4 266 58.6
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 3.8e-65 254.2 995 44.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.4e-64 252.3 254 60.2
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.4e-64 251.5 830 44.0
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.4e-64 251.5 989 43.9
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 4.2e-64 250.8 325 52.3
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.2e-63 249.2 240 63.3
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.6e-63 248.8 940 46.3
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.7e-63 248.1 867 42.2
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 4.6e-63 247.3 271 57.9
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 4.6e-63 247.3 278 56.5
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 4.6e-63 247.3 163 79.1
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-62 245.4 277 56.7
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 3.0e-62 244.6 951 46.2
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 6.6e-62 243.4 243 61.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.9e-61 241.9 943 43.1
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 4.3e-61 240.7 164 78.0
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 7.3e-61 240.0 950 45.4
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.3e-60 239.2 955 46.1
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.3e-60 239.2 263 57.8
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.8e-60 238.0 939 47.0
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.8e-60 237.3 950 44.7
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 6.2e-60 236.9 931 43.3
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-59 236.1 290 54.1
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.8e-59 235.3 222 61.3
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 1.2e-58 232.6 947 44.4
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 2.6e-58 231.5 936 46.9
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.8e-58 230.3 263 57.0
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 5.8e-58 230.3 284 55.6
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.9e-57 228.0 932 45.2
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 4.9e-57 227.3 227 62.1
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 6.4e-57 226.9 936 43.7
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.1e-56 226.1 985 43.0
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 3.2e-56 224.6 213 60.6
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 3.2e-56 224.6 993 39.5
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.7e-55 221.5 936 46.3
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 3.5e-55 221.1 289 51.9
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 3.5e-55 221.1 970 45.6
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-54 219.5 240 54.6
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.0e-54 219.5 240 54.6
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.8e-54 218.8 211 60.7
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 3.0e-54 218.0 142 77.5
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 5.1e-54 217.2 234 57.3
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.5e-53 215.7 136 78.7
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 4.3e-53 214.2 299 50.5
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.6e-52 212.2 254 50.4
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.8e-52 211.5 282 49.3
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.8e-52 211.5 868 44.2
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.4e-51 209.1 162 66.7
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.9e-51 206.8 292 49.0
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.2e-50 206.1 987 43.4
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 4.5e-50 204.1 131 76.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 5.8e-50 203.8 938 40.4
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 7.6e-50 203.4 938 32.9
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.8e-49 201.1 268 50.4
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 6.4e-49 200.3 955 37.3
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.2e-48 198.0 282 48.6
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 7.1e-48 196.8 166 62.7
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 4.6e-47 194.1 171 60.2
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 6.0e-47 193.7 293 48.5
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.8e-46 192.2 302 47.7
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.8e-46 192.2 285 50.5
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 2.5e-45 188.3 134 70.1
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 4.8e-44 184.1 949 45.5
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.8e-42 177.2 283 46.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 3.8e-41 174.5 224 52.7
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 2.5e-40 171.8 134 68.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 3.9e-38 164.5 829 42.8
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 5.7e-37 160.6 212 46.7
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 4.6e-31 141.0 124 58.1
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 3.3e-29 134.8 131 58.0
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 9.7e-29 133.3 182 46.2
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 8.2e-28 130.2 142 51.4
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.0e-22 111.7 150 46.7
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 1.1e-19 103.2 146 42.5
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 5.0e-17 94.4 84 63.1
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.1e-15 89.0 83 61.4
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 9.7e-13 80.1 57 68.4
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 2.2e-09 68.9 470 34.5
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 5.0e-09 67.8 50 70.0
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 2.7e-07 62.0 486 32.3
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 4.7e-07 61.2 108 32.4


User provided reference genes

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