Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 2011.1 1010 100.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1391.3 1013 69.1
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1367.4 1010 67.9
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1366.3 1001 68.8
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1346.6 1014 67.4
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1340.1 1008 67.7
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1336.6 1012 67.2
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1336.2 997 67.7
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1328.2 989 66.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1323.5 1013 64.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1063 64.5
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1318.9 1016 64.9
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1314.7 1013 64.7
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1310.0 1022 65.2
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1309.7 1014 64.6
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1308.5 1014 65.2
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 994 64.8
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1307.7 1010 64.7
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1304.3 1013 64.5
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1301.6 1013 64.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1301.6 1012 64.9
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1300.8 1013 63.9
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1298.9 1078 61.7
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1295.0 1034 64.7
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1294.6 1015 65.1
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1293.5 1012 64.1
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1293.5 1013 63.9
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1288.1 1013 63.5
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1283.9 1013 63.3
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1283.5 1019 63.0
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1278.1 1012 63.6
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1276.2 1012 62.5
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1275.8 1016 63.0
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1269.2 1013 62.5
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1016 62.5
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1264.6 1012 63.7
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1263.8 1014 62.4
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1250.7 1014 61.4
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1250.7 1014 61.5
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1244.2 1007 62.1
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1239.6 1008 62.7
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1236.5 1017 62.5
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1234.2 1014 61.1
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1231.5 1013 60.9
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1231.1 1015 62.6
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1226.5 1012 61.8
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1225.7 1019 61.2
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1224.5 1013 60.7
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1220.7 1019 61.0
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1219.1 1014 60.7
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1218.8 1076 58.1
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1218.8 1014 60.7
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1218.0 1014 60.8
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1214.1 1015 59.7
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1213.7 1015 60.1
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1209.9 1015 60.1
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1206.0 1015 60.1
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1012 60.0
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1203.7 1014 60.1
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1198.0 1015 59.1
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1191.8 1019 60.1
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1189.5 1014 59.2
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1186.4 1013 59.8
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1186.4 1018 59.4
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1185.6 1013 59.8
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1184.1 1014 59.2
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1179.5 1014 58.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1178.3 1015 58.3
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1176.8 1013 58.5
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1171.8 1013 58.4
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1169.8 1013 58.2
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1156.7 1012 57.6
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1153.7 1012 57.4
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1152.9 1022 57.2
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1148.3 1013 57.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1148.3 1012 57.3
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1144.8 1012 57.0
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1144.8 1012 57.0
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1122.5 1016 57.6
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1095.1 984 58.2
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1082.0 796 67.3
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1079.7 781 68.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 3.6e-303 1045.0 1017 53.8
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.8e-302 1042.7 1019 53.6
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 3.8e-300 1035.0 1017 52.4
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.2e-298 1030.0 781 66.1
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.2e-291 1005.0 509 98.6
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.3e-287 993.4 504 99.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 1.5e-272 943.3 687 67.2
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.9e-272 943.0 976 51.6
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.5e-272 942.6 610 75.9
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 7.4e-272 941.0 594 77.6
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.3e-255 887.1 504 87.9
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 4.1e-238 828.9 509 80.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 4.1e-238 828.9 775 54.8
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.1e-234 816.6 991 44.8
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-233 812.8 1027 44.5
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-231 807.4 1029 44.3
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 3.1e-230 802.7 876 48.5
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.0e-228 797.7 528 79.2
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.0e-225 787.7 572 73.3
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.4e-225 787.3 755 52.5
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 5.4e-222 775.4 1014 44.3
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 7.3e-187 658.7 453 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 6.8e-185 652.1 1054 38.0
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 4.6e-181 639.4 434 71.7
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.2e-176 624.8 558 57.5
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 4.2e-174 616.3 1027 37.9
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 6.9e-161 572.4 1025 35.3
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.3e-159 568.2 331 86.1
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 8.4e-151 538.9 464 59.1
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.5e-147 527.3 421 62.0
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.1e-133 481.1 316 78.2
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.6e-131 474.2 316 76.9
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 3.1e-129 467.2 629 42.4
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.6e-120 438.3 537 46.2
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.2e-115 422.2 871 32.1
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.7e-111 408.3 237 84.0
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.6e-109 401.7 299 71.2
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.1e-102 379.0 237 78.9
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.0e-100 370.9 297 58.9
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.7e-95 355.1 425 46.6
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.5e-78 298.9 456 41.2
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 5.3e-52 210.7 389 37.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 4.5e-51 207.6 362 36.7
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-49 203.0 273 43.6
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 2.4e-49 201.8 110 90.9
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 8.7e-47 193.4 166 60.2
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 8.7e-47 193.4 166 60.2
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 4.8e-45 187.6 814 26.5
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 6.9e-44 183.7 745 26.2
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 7.1e-41 173.7 397 33.2
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-40 172.6 393 32.8
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 6.0e-40 170.6 245 42.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 5.3e-36 157.5 312 35.3
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 5.5e-33 147.5 686 23.9
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-32 144.8 359 31.8
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-30 139.8 164 50.6
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 7.4e-30 137.1 114 63.2
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 6.9e-28 130.6 76 85.5
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 1.5e-27 129.4 154 47.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 4.5e-27 127.9 122 59.0
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 6.5e-26 124.0 342 27.8
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.4e-22 110.5 76 65.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.4e-17 96.3 60 78.3
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 9.4e-17 93.6 89 51.7
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-15 90.1 446 24.2
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-14 86.3 195 33.8
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 4.4e-14 84.7 51 74.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 5.7e-14 84.3 46 84.8
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 9.7e-14 83.6 72 61.1
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.1e-12 78.6 49 71.4
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 5.5e-09 67.8 112 33.0
Peaxi162Scf00207g00840 Petunia axillaris HOM05D002927 ORTHO05D003841 4.4e-06 58.2 262 25.2


User provided reference genes

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