Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.7e-293 1011.9 513 100.0
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 1.3e-264 916.0 490 96.3
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 6.0e-238 827.4 509 82.9
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 3.3e-236 821.6 509 83.3
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 3.3e-212 741.9 491 79.0
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.2e-169 600.5 345 89.9
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 1.1e-165 587.4 514 58.2
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 6.8e-165 584.7 513 59.1
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 4.1e-162 575.5 515 58.8
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 1.3e-160 570.5 515 57.9
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 1.7e-160 570.1 515 58.3
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 2.3e-160 569.7 513 56.9
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 1.1e-159 567.4 515 58.1
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 2.0e-156 556.6 534 55.1
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.3e-155 553.9 512 57.6
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 2.9e-155 552.7 518 55.6
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 3.7e-155 552.4 518 55.6
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 2.7e-153 546.2 518 55.4
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 2.7e-153 546.2 518 55.4
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 1.4e-149 533.9 483 57.6
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 2.4e-146 523.1 498 56.6
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 3.2e-146 522.7 511 52.8
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 5.4e-146 521.9 514 54.9
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 7.1e-146 521.5 514 54.3
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 3.5e-145 519.2 517 50.9
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 3.5e-145 519.2 511 52.4
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.7e-144 516.9 510 53.9
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 3.0e-144 516.2 510 54.1
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 3.9e-144 515.8 514 51.4
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 1.1e-143 514.2 515 54.0
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.5e-143 513.8 515 50.9
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 1.9e-143 513.5 512 52.9
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 3.3e-143 512.7 516 51.7
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 5.6e-143 511.9 510 52.0
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 9.6e-143 511.1 513 51.7
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 1.6e-142 510.4 518 52.7
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 2.1e-142 510.0 512 50.2
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 3.1e-141 506.1 512 52.3
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.2e-140 504.2 515 50.5
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 1.5e-140 503.8 433 57.5
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 3.4e-140 502.7 518 53.3
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 1.7e-139 500.4 517 53.2
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.7e-139 500.4 515 52.8
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 2.2e-139 500.0 504 53.8
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.9e-139 499.6 519 52.4
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 4.2e-138 495.7 514 49.0
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 3.5e-137 492.7 516 51.9
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 1.3e-136 490.7 513 50.9
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.1e-135 487.6 492 52.4
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 3.6e-134 482.6 514 50.2
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 2.4e-133 479.9 512 51.2
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 3.1e-133 479.6 527 50.5
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 2.0e-132 476.9 516 49.8
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.0e-132 476.9 512 49.4
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 2.6e-132 476.5 495 52.1
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.7e-131 473.8 495 51.3
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 6.4e-131 471.9 515 49.3
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 6.4e-131 471.9 520 50.4
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 5.5e-130 468.8 511 50.1
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 4.6e-129 465.7 516 49.4
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 6.0e-129 465.3 509 49.7
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 7.9e-129 464.9 519 48.7
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 1.1e-127 461.1 511 49.9
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.9e-127 460.3 519 49.7
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 3.3e-127 459.5 496 50.0
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 4.3e-127 459.1 512 49.6
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 4.3e-127 459.1 512 50.2
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 4.3e-127 459.1 513 49.3
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 4.8e-126 455.7 514 49.0
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 1.8e-125 453.8 503 51.1
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 2.4e-125 453.4 517 48.7
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 3.1e-125 453.0 495 49.7
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 9.0e-125 451.4 509 48.9
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 9.0e-125 451.4 509 48.9
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 7.6e-124 448.4 495 49.3
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 2.9e-123 446.4 515 45.0
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 4.9e-123 445.7 515 48.0
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 5.5e-122 442.2 513 48.5
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 7.1e-122 441.8 519 47.8
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 9.3e-122 441.4 512 48.6
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 7.9e-121 438.3 506 48.4
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 7.9e-121 438.3 512 47.1
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.8e-120 437.2 497 50.1
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 2.3e-120 436.8 516 46.9
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 5.1e-120 435.6 496 48.6
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 1.5e-119 434.1 493 46.7
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.0e-116 423.7 506 48.2
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 2.6e-116 423.3 492 47.0
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 3.2e-114 416.4 506 46.2
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 4.2e-114 416.0 492 47.0
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 2.1e-113 413.7 514 44.7
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 4.6e-113 412.5 496 45.8
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 3.9e-112 409.5 346 57.5
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 3.7e-110 402.9 389 55.0
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 2.9e-107 393.3 513 43.1
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 3.6e-105 386.3 398 51.0
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 1.3e-99 367.9 495 43.6
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 8.5e-99 365.2 480 45.8
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 7.2e-98 362.1 523 39.8
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 6.5e-91 339.0 332 56.0
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 5.5e-90 335.9 390 46.9
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.8e-88 330.9 336 48.8
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 2.2e-83 313.9 271 57.6
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 1.2e-65 255.0 199 62.8
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 1.2e-65 255.0 199 62.8
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.4e-64 251.5 219 56.2
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 7.5e-63 245.7 532 32.1
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 5.2e-56 223.0 529 30.8
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 1.2e-55 221.9 217 50.2
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 2.0e-55 221.1 498 33.7
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 3.7e-54 216.9 115 95.7
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 3.4e-47 193.7 503 28.0
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 7.6e-39 166.0 196 48.5
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 2.3e-35 154.5 203 38.4
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 3.8e-30 137.1 116 61.2
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 2.1e-28 131.3 172 46.5
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 4.8e-25 120.2 115 50.4
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 4.8e-25 120.2 142 43.7
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 9.0e-24 115.9 142 43.0
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.8e-19 101.7 122 43.4
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 3.9e-19 100.5 174 34.5
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 1.4e-16 92.0 116 48.3
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 2.9e-14 84.3 224 28.6
Actinidia33399 Actinidia chinensis HOM05D006455 ORTHO05D008098 4.8e-09 67.0 40 67.5


User provided reference genes

Program Settings